miRNA display CGI


Results 1 - 20 of 499 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29557 5' -65.9 NC_006151.1 + 3247 0.85 0.021823
Target:  5'- --gCGCGGCGgcggagcgggGCGCCGCGGCGCGCGGc -3'
miRNA:   3'- aagGCGCCGC----------UGCGGCGCCGCGCGCU- -5'
29557 5' -65.9 NC_006151.1 + 70628 0.84 0.026844
Target:  5'- aUCCuCGGCGGCGCCGUGGCcgcGCGCGAg -3'
miRNA:   3'- aAGGcGCCGCUGCGGCGCCG---CGCGCU- -5'
29557 5' -65.9 NC_006151.1 + 118152 0.84 0.027547
Target:  5'- -gCCGCGGCGgugGCGCCGCuGGUGCGCGGc -3'
miRNA:   3'- aaGGCGCCGC---UGCGGCG-CCGCGCGCU- -5'
29557 5' -65.9 NC_006151.1 + 122944 0.82 0.037534
Target:  5'- -gCCGaCGGCGGCGCCGCGGgggGCGCGGa -3'
miRNA:   3'- aaGGC-GCCGCUGCGGCGCCg--CGCGCU- -5'
29557 5' -65.9 NC_006151.1 + 84362 0.81 0.041595
Target:  5'- -cCCGCGGCGgugaucGCGaUCGCGGCGCGCGGg -3'
miRNA:   3'- aaGGCGCCGC------UGC-GGCGCCGCGCGCU- -5'
29557 5' -65.9 NC_006151.1 + 131119 0.8 0.051045
Target:  5'- -gCCGCGGCgcggGAgGCCGCGGCGcCGCGGc -3'
miRNA:   3'- aaGGCGCCG----CUgCGGCGCCGC-GCGCU- -5'
29557 5' -65.9 NC_006151.1 + 136427 0.8 0.051045
Target:  5'- -cCCGCGGCGGCGCaCGCcGCGCGCu- -3'
miRNA:   3'- aaGGCGCCGCUGCG-GCGcCGCGCGcu -5'
29557 5' -65.9 NC_006151.1 + 118878 0.8 0.052364
Target:  5'- ---aGCGGCGGCGCgGCGGCGaCGCGGc -3'
miRNA:   3'- aaggCGCCGCUGCGgCGCCGC-GCGCU- -5'
29557 5' -65.9 NC_006151.1 + 141641 0.8 0.053716
Target:  5'- -gCCGCGGCGGCGCgGCGGgGCcccGCGGg -3'
miRNA:   3'- aaGGCGCCGCUGCGgCGCCgCG---CGCU- -5'
29557 5' -65.9 NC_006151.1 + 65139 0.79 0.056094
Target:  5'- cUCCGCGccaGCGACGUgaucuucagcgccuUGCGGCGCGCGAg -3'
miRNA:   3'- aAGGCGC---CGCUGCG--------------GCGCCGCGCGCU- -5'
29557 5' -65.9 NC_006151.1 + 82615 0.79 0.05798
Target:  5'- -cCCGCGcGCgGGCGCCGCGGUggGCGCGGg -3'
miRNA:   3'- aaGGCGC-CG-CUGCGGCGCCG--CGCGCU- -5'
29557 5' -65.9 NC_006151.1 + 106631 0.79 0.060848
Target:  5'- -gCCGCGGUcaccgagcgccugGACGCCGCGGCgcacguGCGCGAg -3'
miRNA:   3'- aaGGCGCCG-------------CUGCGGCGCCG------CGCGCU- -5'
29557 5' -65.9 NC_006151.1 + 64550 0.79 0.061003
Target:  5'- ---gGCGGCGAgGCCGUGGCGCGCc- -3'
miRNA:   3'- aaggCGCCGCUgCGGCGCCGCGCGcu -5'
29557 5' -65.9 NC_006151.1 + 84427 0.79 0.064178
Target:  5'- ---gGCGGCG-CGCgGCGGCGCGCGGc -3'
miRNA:   3'- aaggCGCCGCuGCGgCGCCGCGCGCU- -5'
29557 5' -65.9 NC_006151.1 + 96217 0.79 0.064178
Target:  5'- -gCCGUGGCGGCgGCCGCGGCgagGCGCa- -3'
miRNA:   3'- aaGGCGCCGCUG-CGGCGCCG---CGCGcu -5'
29557 5' -65.9 NC_006151.1 + 95291 0.78 0.069241
Target:  5'- -aCgGCGGCGACGCgCGCGGCccggcgcaGCGCGGc -3'
miRNA:   3'- aaGgCGCCGCUGCG-GCGCCG--------CGCGCU- -5'
29557 5' -65.9 NC_006151.1 + 29588 0.78 0.069241
Target:  5'- -aUCGCGGCGGCugcgGCCGCGGCG-GCGGg -3'
miRNA:   3'- aaGGCGCCGCUG----CGGCGCCGCgCGCU- -5'
29557 5' -65.9 NC_006151.1 + 88392 0.78 0.076593
Target:  5'- gUCCGCGGCGu--CCGCGGC-CGCGAg -3'
miRNA:   3'- aAGGCGCCGCugcGGCGCCGcGCGCU- -5'
29557 5' -65.9 NC_006151.1 + 127838 0.77 0.078545
Target:  5'- --aCGUGGCGGCGUCGCGGCuGCGCc- -3'
miRNA:   3'- aagGCGCCGCUGCGGCGCCG-CGCGcu -5'
29557 5' -65.9 NC_006151.1 + 123018 0.77 0.080544
Target:  5'- -cCCGcCGGCgGACGCCGUGGCGUggGCGGa -3'
miRNA:   3'- aaGGC-GCCG-CUGCGGCGCCGCG--CGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.