miRNA display CGI


Results 21 - 40 of 499 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29557 5' -65.9 NC_006151.1 + 135527 0.68 0.339876
Target:  5'- gUCCuCGGCGGCGa-GCGGgGCGgGGa -3'
miRNA:   3'- aAGGcGCCGCUGCggCGCCgCGCgCU- -5'
29557 5' -65.9 NC_006151.1 + 135482 0.74 0.138827
Target:  5'- gUCCGC-GCGG-GCCagGCGGCGCGCGGc -3'
miRNA:   3'- aAGGCGcCGCUgCGG--CGCCGCGCGCU- -5'
29557 5' -65.9 NC_006151.1 + 135353 0.68 0.325727
Target:  5'- gUCCGCGagccgccgcGCGuugGCCGCGuGCGcCGCGAc -3'
miRNA:   3'- aAGGCGC---------CGCug-CGGCGC-CGC-GCGCU- -5'
29557 5' -65.9 NC_006151.1 + 135093 0.7 0.244468
Target:  5'- ---gGCGGCGGgGCCG-GGCGgGCGGc -3'
miRNA:   3'- aaggCGCCGCUgCGGCgCCGCgCGCU- -5'
29557 5' -65.9 NC_006151.1 + 134802 0.68 0.325727
Target:  5'- -gCCGCGGCGgcccGCGCCGgacccggaCGGUG-GCGAc -3'
miRNA:   3'- aaGGCGCCGC----UGCGGC--------GCCGCgCGCU- -5'
29557 5' -65.9 NC_006151.1 + 133914 0.66 0.445708
Target:  5'- -cCCcUGGCGGCGCagGCGGCGUuccagaaguugauccGCGAc -3'
miRNA:   3'- aaGGcGCCGCUGCGg-CGCCGCG---------------CGCU- -5'
29557 5' -65.9 NC_006151.1 + 133650 0.7 0.255203
Target:  5'- gUCCGgGuGCGagaggcgcugccgGCGCgGCGGCGCGCc- -3'
miRNA:   3'- aAGGCgC-CGC-------------UGCGgCGCCGCGCGcu -5'
29557 5' -65.9 NC_006151.1 + 133497 0.67 0.369491
Target:  5'- -aCCuuGGCGGCGCgGgGG-GCGCGGg -3'
miRNA:   3'- aaGGcgCCGCUGCGgCgCCgCGCGCU- -5'
29557 5' -65.9 NC_006151.1 + 133386 0.69 0.298755
Target:  5'- -gCCGgGGCGGCgGCCGgGGCcgaGCGGg -3'
miRNA:   3'- aaGGCgCCGCUG-CGGCgCCGcg-CGCU- -5'
29557 5' -65.9 NC_006151.1 + 133348 0.71 0.238969
Target:  5'- gUUCCGCGGCGGCgGUgGUGGUG-GUGGu -3'
miRNA:   3'- -AAGGCGCCGCUG-CGgCGCCGCgCGCU- -5'
29557 5' -65.9 NC_006151.1 + 133153 0.66 0.4338
Target:  5'- -aCU-CGGCGGCGgCGCGG-GCGUGGg -3'
miRNA:   3'- aaGGcGCCGCUGCgGCGCCgCGCGCU- -5'
29557 5' -65.9 NC_006151.1 + 132669 0.67 0.417114
Target:  5'- gUCCGCGGaggcCGACaGCaUGaccaGGCGCGCGu -3'
miRNA:   3'- aAGGCGCC----GCUG-CG-GCg---CCGCGCGCu -5'
29557 5' -65.9 NC_006151.1 + 132469 0.66 0.425408
Target:  5'- --gCGCGGCaguaGGCGuCCaGCaGGCGCGCGu -3'
miRNA:   3'- aagGCGCCG----CUGC-GG-CG-CCGCGCGCu -5'
29557 5' -65.9 NC_006151.1 + 132432 0.67 0.417114
Target:  5'- -gUCGCGGCG-CGCCuGCG-CGUGCa- -3'
miRNA:   3'- aaGGCGCCGCuGCGG-CGCcGCGCGcu -5'
29557 5' -65.9 NC_006151.1 + 132373 0.67 0.384947
Target:  5'- -gCCagGCGcGCGACGUCGCGGUaguaGCGCc- -3'
miRNA:   3'- aaGG--CGC-CGCUGCGGCGCCG----CGCGcu -5'
29557 5' -65.9 NC_006151.1 + 132138 0.67 0.417114
Target:  5'- cUCgCGcCGGCgGugGuuGaCGGCGCGCa- -3'
miRNA:   3'- aAG-GC-GCCG-CugCggC-GCCGCGCGcu -5'
29557 5' -65.9 NC_006151.1 + 132016 0.71 0.218004
Target:  5'- aUCCGCaccugguGCGAgagguaGCCgGCGGCGCGCGGc -3'
miRNA:   3'- aAGGCGc------CGCUg-----CGG-CGCCGCGCGCU- -5'
29557 5' -65.9 NC_006151.1 + 131966 0.66 0.458667
Target:  5'- ---gGCGGCaguacguGugGUCGCGGUacucGCGCGAg -3'
miRNA:   3'- aaggCGCCG-------CugCGGCGCCG----CGCGCU- -5'
29557 5' -65.9 NC_006151.1 + 131928 0.68 0.361924
Target:  5'- cUCCGCGGUGcUGCCGUagcuggccacgGGCGaggGCGGg -3'
miRNA:   3'- aAGGCGCCGCuGCGGCG-----------CCGCg--CGCU- -5'
29557 5' -65.9 NC_006151.1 + 131764 0.72 0.203329
Target:  5'- -gUCGCGGUcGCGaCCGCGGC-CGCGGg -3'
miRNA:   3'- aaGGCGCCGcUGC-GGCGCCGcGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.