miRNA display CGI


Results 1 - 20 of 499 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29557 5' -65.9 NC_006151.1 + 141641 0.8 0.053716
Target:  5'- -gCCGCGGCGGCGCgGCGGgGCcccGCGGg -3'
miRNA:   3'- aaGGCGCCGCUGCGgCGCCgCG---CGCU- -5'
29557 5' -65.9 NC_006151.1 + 140047 0.7 0.273546
Target:  5'- --gUGCGGcCGcACGCCaccgagGCGGCGCGCGu -3'
miRNA:   3'- aagGCGCC-GC-UGCGG------CGCCGCGCGCu -5'
29557 5' -65.9 NC_006151.1 + 139637 0.67 0.384947
Target:  5'- aUCCGgcgcCGGCGcggGgGUCGCGGCGgGCGc -3'
miRNA:   3'- aAGGC----GCCGC---UgCGGCGCCGCgCGCu -5'
29557 5' -65.9 NC_006151.1 + 139574 0.66 0.476252
Target:  5'- gUCCGCGaGCGccugggcucGCGCCcccccgaGCGGCggcccguccggGCGCGGc -3'
miRNA:   3'- aAGGCGC-CGC---------UGCGG-------CGCCG-----------CGCGCU- -5'
29557 5' -65.9 NC_006151.1 + 139275 0.73 0.163964
Target:  5'- cUCCGaCGGCGgacGCGCCgcccucggcgucuGCGGCGCGUGc -3'
miRNA:   3'- aAGGC-GCCGC---UGCGG-------------CGCCGCGCGCu -5'
29557 5' -65.9 NC_006151.1 + 139213 0.75 0.122874
Target:  5'- cUCCugGCGGCGACGCUGCcgcacaucGCGCGCGu -3'
miRNA:   3'- aAGG--CGCCGCUGCGGCGc-------CGCGCGCu -5'
29557 5' -65.9 NC_006151.1 + 138708 0.66 0.450868
Target:  5'- -gCC-CGGCGcUGCgCGCcGCGCGCGGg -3'
miRNA:   3'- aaGGcGCCGCuGCG-GCGcCGCGCGCU- -5'
29557 5' -65.9 NC_006151.1 + 138613 0.7 0.250071
Target:  5'- -gCCGCucGGCGAggaCGCCGCcgggGGCGCGCc- -3'
miRNA:   3'- aaGGCG--CCGCU---GCGGCG----CCGCGCGcu -5'
29557 5' -65.9 NC_006151.1 + 138095 0.69 0.31202
Target:  5'- cUUCGCccGGCGcACGCCGCuGGCggacaugcuGCGCGGc -3'
miRNA:   3'- aAGGCG--CCGC-UGCGGCG-CCG---------CGCGCU- -5'
29557 5' -65.9 NC_006151.1 + 137739 0.68 0.342759
Target:  5'- -gCgGUGGcCGGCGCCGacacgguccgcggccUGGCGCGCGu -3'
miRNA:   3'- aaGgCGCC-GCUGCGGC---------------GCCGCGCGCu -5'
29557 5' -65.9 NC_006151.1 + 137278 0.66 0.4338
Target:  5'- -cCCGCGG-GcACGCUcgagGCGGCcauGCGCGGg -3'
miRNA:   3'- aaGGCGCCgC-UGCGG----CGCCG---CGCGCU- -5'
29557 5' -65.9 NC_006151.1 + 137137 0.69 0.298755
Target:  5'- --gCGCGGCG-CGaCGCGGCGC-CGGa -3'
miRNA:   3'- aagGCGCCGCuGCgGCGCCGCGcGCU- -5'
29557 5' -65.9 NC_006151.1 + 137097 0.74 0.129041
Target:  5'- cUUCGCGGUgcuggccgggGACGCCugGgGGCGCGCGAc -3'
miRNA:   3'- aAGGCGCCG----------CUGCGG--CgCCGCGCGCU- -5'
29557 5' -65.9 NC_006151.1 + 136813 0.67 0.384947
Target:  5'- -cUCGCGGCcgacGCGCCGCGcgggcucuGCGaCGCGGc -3'
miRNA:   3'- aaGGCGCCGc---UGCGGCGC--------CGC-GCGCU- -5'
29557 5' -65.9 NC_006151.1 + 136637 0.71 0.238969
Target:  5'- -cCCGCGGCG-C-CCGUGGgGCGCu- -3'
miRNA:   3'- aaGGCGCCGCuGcGGCGCCgCGCGcu -5'
29557 5' -65.9 NC_006151.1 + 136427 0.8 0.051045
Target:  5'- -cCCGCGGCGGCGCaCGCcGCGCGCu- -3'
miRNA:   3'- aaGGCGCCGCUGCG-GCGcCGCGCGcu -5'
29557 5' -65.9 NC_006151.1 + 136378 0.69 0.31202
Target:  5'- gUUCGCGGCGcucucGCGCUucugcugccugaGCGGCuacGCGCGGg -3'
miRNA:   3'- aAGGCGCCGC-----UGCGG------------CGCCG---CGCGCU- -5'
29557 5' -65.9 NC_006151.1 + 136103 0.66 0.442287
Target:  5'- -aUCGCGGUcgGGCGCCGCGG-GC-UGAc -3'
miRNA:   3'- aaGGCGCCG--CUGCGGCGCCgCGcGCU- -5'
29557 5' -65.9 NC_006151.1 + 135939 0.72 0.194028
Target:  5'- -gCCGCGGgGA-GCCccucGCGGCGCGgGAc -3'
miRNA:   3'- aaGGCGCCgCUgCGG----CGCCGCGCgCU- -5'
29557 5' -65.9 NC_006151.1 + 135881 0.7 0.258092
Target:  5'- gUCCGCGuGCGGCccguguucgucgccGCCGCGaccccggcggucguGCGCGCGc -3'
miRNA:   3'- aAGGCGC-CGCUG--------------CGGCGC--------------CGCGCGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.