miRNA display CGI


Results 21 - 40 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29561 3' -49.6 NC_006151.1 + 73967 0.7 0.971612
Target:  5'- cGCGuGGCCAccguGGCCaUGccCGCGUCCg -3'
miRNA:   3'- -CGC-UCGGUuu--CUGGaACaaGUGCAGG- -5'
29561 3' -49.6 NC_006151.1 + 6015 0.7 0.971612
Target:  5'- gGCG-GCCGGGGACCc-GggCuCGUCCu -3'
miRNA:   3'- -CGCuCGGUUUCUGGaaCaaGuGCAGG- -5'
29561 3' -49.6 NC_006151.1 + 94697 0.69 0.974431
Target:  5'- cGCG-GCCAcGGACCacUGcgCGCGcUCCa -3'
miRNA:   3'- -CGCuCGGUuUCUGGa-ACaaGUGC-AGG- -5'
29561 3' -49.6 NC_006151.1 + 42686 0.69 0.976535
Target:  5'- uGCGAGCCGGAGACggagacaaUCACcGUCUu -3'
miRNA:   3'- -CGCUCGGUUUCUGgaaca---AGUG-CAGG- -5'
29561 3' -49.6 NC_006151.1 + 65746 0.69 0.979449
Target:  5'- -gGAGCCgGGAGGCCUcGUcCcCGUCCc -3'
miRNA:   3'- cgCUCGG-UUUCUGGAaCAaGuGCAGG- -5'
29561 3' -49.6 NC_006151.1 + 69433 0.69 0.981664
Target:  5'- gGCGGcGCC----GCCgccGUUCGCGUCCu -3'
miRNA:   3'- -CGCU-CGGuuucUGGaa-CAAGUGCAGG- -5'
29561 3' -49.6 NC_006151.1 + 64517 0.69 0.981664
Target:  5'- cGCGccGCCAAAGGCCgccgcGgcCGCGUCg -3'
miRNA:   3'- -CGCu-CGGUUUCUGGaa---CaaGUGCAGg -5'
29561 3' -49.6 NC_006151.1 + 116919 0.69 0.983696
Target:  5'- uCGGGCCAcGGGCCguccucgUCGCGggCCa -3'
miRNA:   3'- cGCUCGGUuUCUGGaaca---AGUGCa-GG- -5'
29561 3' -49.6 NC_006151.1 + 102015 0.69 0.983696
Target:  5'- cGCGAGCCcauGGGCU----UCGcCGUCCg -3'
miRNA:   3'- -CGCUCGGuu-UCUGGaacaAGU-GCAGG- -5'
29561 3' -49.6 NC_006151.1 + 93580 0.68 0.985552
Target:  5'- gGCGcGCCAAAGAgCggGcUCGCG-CCg -3'
miRNA:   3'- -CGCuCGGUUUCUgGaaCaAGUGCaGG- -5'
29561 3' -49.6 NC_006151.1 + 41677 0.68 0.985552
Target:  5'- aUGAGauCCGugGGGACCggcgUCACGUCCg -3'
miRNA:   3'- cGCUC--GGU--UUCUGGaacaAGUGCAGG- -5'
29561 3' -49.6 NC_006151.1 + 41740 0.68 0.985552
Target:  5'- aUGAGauCCGugGGGACCggcgUCACGUCCg -3'
miRNA:   3'- cGCUC--GGU--UUCUGGaacaAGUGCAGG- -5'
29561 3' -49.6 NC_006151.1 + 95141 0.68 0.987242
Target:  5'- cGCGccGCCGGGucGGCCaUGUcCAUGUCCa -3'
miRNA:   3'- -CGCu-CGGUUU--CUGGaACAaGUGCAGG- -5'
29561 3' -49.6 NC_006151.1 + 4807 0.68 0.987242
Target:  5'- aGCGGGCCGc-GGCCUggcGgaCGuCGUCCu -3'
miRNA:   3'- -CGCUCGGUuuCUGGAa--CaaGU-GCAGG- -5'
29561 3' -49.6 NC_006151.1 + 83126 0.68 0.988776
Target:  5'- cGCaGAGCUcgGGcGCCUUGUaCGCG-CCa -3'
miRNA:   3'- -CG-CUCGGuuUC-UGGAACAaGUGCaGG- -5'
29561 3' -49.6 NC_006151.1 + 58262 0.68 0.988776
Target:  5'- cGCGGGCCGcAGcACCgucucGcgCACGUCa -3'
miRNA:   3'- -CGCUCGGUuUC-UGGaa---CaaGUGCAGg -5'
29561 3' -49.6 NC_006151.1 + 65974 0.68 0.990162
Target:  5'- uCGAGCCGGuccucgccGGCCgcgagCGCGUCCu -3'
miRNA:   3'- cGCUCGGUUu-------CUGGaacaaGUGCAGG- -5'
29561 3' -49.6 NC_006151.1 + 64962 0.68 0.990162
Target:  5'- uGCGGGCgc-AGGCCgagcgcCACGUCCa -3'
miRNA:   3'- -CGCUCGguuUCUGGaacaa-GUGCAGG- -5'
29561 3' -49.6 NC_006151.1 + 34478 0.68 0.990162
Target:  5'- gGCGGGUCc-GGGCUcgagGUUCGgGUCCg -3'
miRNA:   3'- -CGCUCGGuuUCUGGaa--CAAGUgCAGG- -5'
29561 3' -49.6 NC_006151.1 + 87347 0.68 0.990927
Target:  5'- cCGGGCCuccAGGGCCUggcggcccccgucGcgCACGUCCc -3'
miRNA:   3'- cGCUCGGu--UUCUGGAa------------CaaGUGCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.