miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29561 3' -49.6 NC_006151.1 + 136293 0.74 0.839679
Target:  5'- uGCGGGCCcucAAGGACCUgcUGcUCACGUa- -3'
miRNA:   3'- -CGCUCGG---UUUCUGGA--ACaAGUGCAgg -5'
29561 3' -49.6 NC_006151.1 + 135487 0.76 0.782482
Target:  5'- cGCGGGCCAGGcggcgcgcggccucGGCCgaGgccaUCACGUCCu -3'
miRNA:   3'- -CGCUCGGUUU--------------CUGGaaCa---AGUGCAGG- -5'
29561 3' -49.6 NC_006151.1 + 135408 0.68 0.991411
Target:  5'- uCGucGCCGGAGGCCUcGUggCGCG-CCa -3'
miRNA:   3'- cGCu-CGGUUUCUGGAaCAa-GUGCaGG- -5'
29561 3' -49.6 NC_006151.1 + 135356 0.67 0.995209
Target:  5'- cGCGAGCCGccGcGCgUUGgcCGCGUgCg -3'
miRNA:   3'- -CGCUCGGUuuC-UGgAACaaGUGCAgG- -5'
29561 3' -49.6 NC_006151.1 + 133165 0.7 0.968576
Target:  5'- cGCGGGCgu-GGGCCUcGgccaCGCGUCCc -3'
miRNA:   3'- -CGCUCGguuUCUGGAaCaa--GUGCAGG- -5'
29561 3' -49.6 NC_006151.1 + 129971 0.66 0.99826
Target:  5'- cGCGAGCgCAcggcgcggAAGGCCUcGUcgUCggggAUGUCCg -3'
miRNA:   3'- -CGCUCG-GU--------UUCUGGAaCA--AG----UGCAGG- -5'
29561 3' -49.6 NC_006151.1 + 127809 0.66 0.996515
Target:  5'- cGgGGGCgCGAGGuCCUugcgGUUCACGUa- -3'
miRNA:   3'- -CgCUCG-GUUUCuGGAa---CAAGUGCAgg -5'
29561 3' -49.6 NC_006151.1 + 127331 0.67 0.99253
Target:  5'- cGCGGGCgGGGGugCUgGUaCACGUg- -3'
miRNA:   3'- -CGCUCGgUUUCugGAaCAaGUGCAgg -5'
29561 3' -49.6 NC_006151.1 + 123625 0.67 0.995905
Target:  5'- cGCGAGCU--GGugCUggcgGUugcagucuUCAgGUCCg -3'
miRNA:   3'- -CGCUCGGuuUCugGAa---CA--------AGUgCAGG- -5'
29561 3' -49.6 NC_006151.1 + 123157 0.66 0.997914
Target:  5'- cGCGAGCUggaGAAGACCcUG--CGCGUg- -3'
miRNA:   3'- -CGCUCGG---UUUCUGGaACaaGUGCAgg -5'
29561 3' -49.6 NC_006151.1 + 122619 0.72 0.92503
Target:  5'- uGCGGGCCcucGACCU-GUUCACGcacaaCCu -3'
miRNA:   3'- -CGCUCGGuuuCUGGAaCAAGUGCa----GG- -5'
29561 3' -49.6 NC_006151.1 + 121914 0.66 0.997513
Target:  5'- cGCGGGCCGAgggGGACCgcGUgCugGgggcgcuggCCg -3'
miRNA:   3'- -CGCUCGGUU---UCUGGaaCAaGugCa--------GG- -5'
29561 3' -49.6 NC_006151.1 + 117072 0.66 0.997513
Target:  5'- uCGAGCagcAGGCgCgUGgUCGCGUCCa -3'
miRNA:   3'- cGCUCGguuUCUG-GaACaAGUGCAGG- -5'
29561 3' -49.6 NC_006151.1 + 116919 0.69 0.983696
Target:  5'- uCGGGCCAcGGGCCguccucgUCGCGggCCa -3'
miRNA:   3'- cGCUCGGUuUCUGGaaca---AGUGCa-GG- -5'
29561 3' -49.6 NC_006151.1 + 115810 0.66 0.997513
Target:  5'- cGCGcGCgGAuGGCCUUGcgCAUGgCCa -3'
miRNA:   3'- -CGCuCGgUUuCUGGAACaaGUGCaGG- -5'
29561 3' -49.6 NC_006151.1 + 114671 0.72 0.92503
Target:  5'- cGUGAGCgccgCGAAGGCCUcGUgcucgaagggCGCGUCCc -3'
miRNA:   3'- -CGCUCG----GUUUCUGGAaCAa---------GUGCAGG- -5'
29561 3' -49.6 NC_006151.1 + 109113 0.66 0.99826
Target:  5'- gGCGAGCCGccGGCC-----CGCGcCCg -3'
miRNA:   3'- -CGCUCGGUuuCUGGaacaaGUGCaGG- -5'
29561 3' -49.6 NC_006151.1 + 108377 0.72 0.91928
Target:  5'- -aGAGCCGAAGGCCggUGcaccgccggACGUCCg -3'
miRNA:   3'- cgCUCGGUUUCUGGa-ACaag------UGCAGG- -5'
29561 3' -49.6 NC_006151.1 + 103015 0.66 0.997513
Target:  5'- cGUGAGCaCGgacgagcgccucGGGGCCUgGUUCGCG-CUg -3'
miRNA:   3'- -CGCUCG-GU------------UUCUGGAaCAAGUGCaGG- -5'
29561 3' -49.6 NC_006151.1 + 102288 0.67 0.99253
Target:  5'- cGCGgcccGGCCGGGGACUUUGUggcCG-CCa -3'
miRNA:   3'- -CGC----UCGGUUUCUGGAACAaguGCaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.