miRNA display CGI


Results 21 - 40 of 199 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29561 5' -62.1 NC_006151.1 + 138983 0.73 0.252059
Target:  5'- --cGACGCGCCGCGcCGCGCUCAGc- -3'
miRNA:   3'- cccCUGCGCGGCGUcGUGCGAGUCca -5'
29561 5' -62.1 NC_006151.1 + 59319 0.73 0.256757
Target:  5'- cGGGccCGCGCCcccgcccgccccCAGCGCGCUCAGGg -3'
miRNA:   3'- -CCCcuGCGCGGc-----------GUCGUGCGAGUCCa -5'
29561 5' -62.1 NC_006151.1 + 37862 0.73 0.257942
Target:  5'- cGGGcCGCGCCGCGGaccccCGCGC-CGGGg -3'
miRNA:   3'- cCCCuGCGCGGCGUC-----GUGCGaGUCCa -5'
29561 5' -62.1 NC_006151.1 + 51399 0.73 0.270047
Target:  5'- cGGGGcgaGCGCGUCGCAGCGCGUgCAc-- -3'
miRNA:   3'- -CCCC---UGCGCGGCGUCGUGCGaGUcca -5'
29561 5' -62.1 NC_006151.1 + 130681 0.73 0.276268
Target:  5'- cGGGGCGCGgCGCAGgAUGUcCGGGg -3'
miRNA:   3'- cCCCUGCGCgGCGUCgUGCGaGUCCa -5'
29561 5' -62.1 NC_006151.1 + 115184 0.73 0.276268
Target:  5'- aGGGGGCGCuCCaGcCAGCGCGCcgCGGGc -3'
miRNA:   3'- -CCCCUGCGcGG-C-GUCGUGCGa-GUCCa -5'
29561 5' -62.1 NC_006151.1 + 104902 0.73 0.276268
Target:  5'- uGGuGGACGCgGCgGCGGCGCGCgaccgcgaCGGGg -3'
miRNA:   3'- -CC-CCUGCG-CGgCGUCGUGCGa-------GUCCa -5'
29561 5' -62.1 NC_006151.1 + 68978 0.73 0.276268
Target:  5'- -cGGACGCcgGCCaGCAGCGCGCgcacgCAGGc -3'
miRNA:   3'- ccCCUGCG--CGG-CGUCGUGCGa----GUCCa -5'
29561 5' -62.1 NC_006151.1 + 31015 0.72 0.29562
Target:  5'- aGGGGGuCGcCGCCGCGGCccuCGCggccCGGGa -3'
miRNA:   3'- -CCCCU-GC-GCGGCGUCGu--GCGa---GUCCa -5'
29561 5' -62.1 NC_006151.1 + 64546 0.72 0.300955
Target:  5'- cGGGGGCGgcgagGCCGUGGCGCGCcagcucgacgagCAGGUc -3'
miRNA:   3'- -CCCCUGCg----CGGCGUCGUGCGa-----------GUCCA- -5'
29561 5' -62.1 NC_006151.1 + 2287 0.72 0.308412
Target:  5'- cGGGGCGC-CCGCGGCggcgacgGCGCcCGGGg -3'
miRNA:   3'- cCCCUGCGcGGCGUCG-------UGCGaGUCCa -5'
29561 5' -62.1 NC_006151.1 + 64486 0.72 0.309097
Target:  5'- cGGGGACGC-CCGCGG-GCGCgggcggCGGGc -3'
miRNA:   3'- -CCCCUGCGcGGCGUCgUGCGa-----GUCCa -5'
29561 5' -62.1 NC_006151.1 + 73600 0.72 0.309097
Target:  5'- cGGGGugcagcugGCGCCGCAGCugGU--GGGUg -3'
miRNA:   3'- -CCCCug------CGCGGCGUCGugCGagUCCA- -5'
29561 5' -62.1 NC_006151.1 + 137122 0.72 0.316009
Target:  5'- uGGGGGCGCGCgacggCGCGGCGCGacgCGGc- -3'
miRNA:   3'- -CCCCUGCGCG-----GCGUCGUGCga-GUCca -5'
29561 5' -62.1 NC_006151.1 + 142323 0.71 0.323038
Target:  5'- gGGGGcccGCGCGCuCGCGGCGCccGCUUuGGa -3'
miRNA:   3'- -CCCC---UGCGCG-GCGUCGUG--CGAGuCCa -5'
29561 5' -62.1 NC_006151.1 + 3256 0.71 0.328744
Target:  5'- cGGaGcGGgGCGCCGCGGCGCGCggcgaugugcgcCAGGg -3'
miRNA:   3'- -CC-C-CUgCGCGGCGUCGUGCGa-----------GUCCa -5'
29561 5' -62.1 NC_006151.1 + 656 0.71 0.330182
Target:  5'- cGGGGCGCgGCCGgGGCGgGCUCcgcGGa -3'
miRNA:   3'- cCCCUGCG-CGGCgUCGUgCGAGu--CCa -5'
29561 5' -62.1 NC_006151.1 + 31622 0.71 0.330182
Target:  5'- cGGGGAugcCGCGCCgGCAcgagcGCACGCgggcgcgCGGGg -3'
miRNA:   3'- -CCCCU---GCGCGG-CGU-----CGUGCGa------GUCCa -5'
29561 5' -62.1 NC_006151.1 + 29455 0.71 0.330182
Target:  5'- aGGGGACGCGgagggaGCgGGCGCGC-CGGGa -3'
miRNA:   3'- -CCCCUGCGCgg----CG-UCGUGCGaGUCCa -5'
29561 5' -62.1 NC_006151.1 + 4153 0.71 0.337442
Target:  5'- cGGGGAuCGCGUCGCGGaGCGCgagCAGc- -3'
miRNA:   3'- -CCCCU-GCGCGGCGUCgUGCGa--GUCca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.