miRNA display CGI


Results 1 - 20 of 199 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29561 5' -62.1 NC_006151.1 + 142323 0.71 0.323038
Target:  5'- gGGGGcccGCGCGCuCGCGGCGCccGCUUuGGa -3'
miRNA:   3'- -CCCC---UGCGCG-GCGUCGUG--CGAGuCCa -5'
29561 5' -62.1 NC_006151.1 + 141855 0.66 0.641193
Target:  5'- aGGGGcuCGCGCCGC-GC-C-CUCuGGUg -3'
miRNA:   3'- -CCCCu-GCGCGGCGuCGuGcGAGuCCA- -5'
29561 5' -62.1 NC_006151.1 + 141791 0.68 0.5054
Target:  5'- cGGGGACGCGggucggucCCGCcccgagGGCACgggccgGUUCGGGg -3'
miRNA:   3'- -CCCCUGCGC--------GGCG------UCGUG------CGAGUCCa -5'
29561 5' -62.1 NC_006151.1 + 141632 0.73 0.246285
Target:  5'- cGGGuCGCuGCCGCGGCGgCGCggCGGGg -3'
miRNA:   3'- cCCCuGCG-CGGCGUCGU-GCGa-GUCCa -5'
29561 5' -62.1 NC_006151.1 + 140213 0.7 0.407901
Target:  5'- cGGGGGCgGUGCUGCAgaaccuGCGCcugaaGCUCGGGc -3'
miRNA:   3'- -CCCCUG-CGCGGCGU------CGUG-----CGAGUCCa -5'
29561 5' -62.1 NC_006151.1 + 139281 0.68 0.527075
Target:  5'- cGGcGGACGCGCCGCccucggcgucugcGGCGCgugcugcucgaccguGCUCgccGGGa -3'
miRNA:   3'- -CC-CCUGCGCGGCG-------------UCGUG---------------CGAG---UCCa -5'
29561 5' -62.1 NC_006151.1 + 138983 0.73 0.252059
Target:  5'- --cGACGCGCCGCGcCGCGCUCAGc- -3'
miRNA:   3'- cccCUGCGCGGCGUcGUGCGAGUCca -5'
29561 5' -62.1 NC_006151.1 + 138696 0.66 0.601746
Target:  5'- -cGGACGCGCugagcccggCGCuGCGCGCcgcgcgCGGGUc -3'
miRNA:   3'- ccCCUGCGCG---------GCGuCGUGCGa-----GUCCA- -5'
29561 5' -62.1 NC_006151.1 + 138634 0.66 0.651056
Target:  5'- cGGGGGCGCGCCGgacugggaGGCcuucaACGC-CAcGGc -3'
miRNA:   3'- -CCCCUGCGCGGCg-------UCG-----UGCGaGU-CCa -5'
29561 5' -62.1 NC_006151.1 + 138499 0.66 0.651056
Target:  5'- cGGcGGGCGC-CCGCuGCACcuccucgucCUCGGGg -3'
miRNA:   3'- -CC-CCUGCGcGGCGuCGUGc--------GAGUCCa -5'
29561 5' -62.1 NC_006151.1 + 137412 0.69 0.468665
Target:  5'- gGGGGGCGCccucGCCGCcGC-CGCg-GGGUc -3'
miRNA:   3'- -CCCCUGCG----CGGCGuCGuGCGagUCCA- -5'
29561 5' -62.1 NC_006151.1 + 137122 0.72 0.316009
Target:  5'- uGGGGGCGCGCgacggCGCGGCGCGacgCGGc- -3'
miRNA:   3'- -CCCCUGCGCG-----GCGUCGUGCga-GUCca -5'
29561 5' -62.1 NC_006151.1 + 136995 0.66 0.621455
Target:  5'- cGGcGGGCGCGCgCGCAcgGCGCU-GGGc -3'
miRNA:   3'- -CC-CCUGCGCG-GCGUcgUGCGAgUCCa -5'
29561 5' -62.1 NC_006151.1 + 135105 0.69 0.459695
Target:  5'- gGGcGGGCG-GCgGUAGCGCGCggggCGGGc -3'
miRNA:   3'- -CC-CCUGCgCGgCGUCGUGCGa---GUCCa -5'
29561 5' -62.1 NC_006151.1 + 135010 0.66 0.640206
Target:  5'- cGGGGGCGCGgggggGCAGCAgCGgggccgcgucgucCUCGGGg -3'
miRNA:   3'- -CCCCUGCGCgg---CGUCGU-GC-------------GAGUCCa -5'
29561 5' -62.1 NC_006151.1 + 134829 0.66 0.641193
Target:  5'- -cGGugGCGaCCGC-GCGCGCacacacgCGGGg -3'
miRNA:   3'- ccCCugCGC-GGCGuCGUGCGa------GUCCa -5'
29561 5' -62.1 NC_006151.1 + 134738 0.7 0.416279
Target:  5'- cGGGACuuuguCGCCccgaGCAGCGCGCgCGGGg -3'
miRNA:   3'- cCCCUGc----GCGG----CGUCGUGCGaGUCCa -5'
29561 5' -62.1 NC_006151.1 + 133793 0.67 0.57138
Target:  5'- gGGGGAgGCGUgcaGCAuccggguGCACGUcCGGGUg -3'
miRNA:   3'- -CCCCUgCGCGg--CGU-------CGUGCGaGUCCA- -5'
29561 5' -62.1 NC_006151.1 + 133312 0.68 0.524228
Target:  5'- cGGGGGCgGC-CCGUgucgaGGCGCGC-CGGGc -3'
miRNA:   3'- -CCCCUG-CGcGGCG-----UCGUGCGaGUCCa -5'
29561 5' -62.1 NC_006151.1 + 132332 0.68 0.496095
Target:  5'- ---cGCGCGCCGUGGcCACGUaCAGGUg -3'
miRNA:   3'- ccccUGCGCGGCGUC-GUGCGaGUCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.