miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29564 3' -57.4 NC_006151.1 + 11304 0.66 0.869407
Target:  5'- cCCGCuCUCCcgGgCCGcCGCGauaCCGCg -3'
miRNA:   3'- aGGCG-GAGGuaCaGGCuGUGCa--GGUG- -5'
29564 3' -57.4 NC_006151.1 + 21923 0.66 0.869407
Target:  5'- cUCGuCCUCCGUggggaacauguaGUCCgcgGACGgGUCCACc -3'
miRNA:   3'- aGGC-GGAGGUA------------CAGG---CUGUgCAGGUG- -5'
29564 3' -57.4 NC_006151.1 + 9115 0.66 0.861981
Target:  5'- cCCGCCUCgCAcucGcCCGACACucgGcCCGCg -3'
miRNA:   3'- aGGCGGAG-GUa--CaGGCUGUG---CaGGUG- -5'
29564 3' -57.4 NC_006151.1 + 75284 0.66 0.861981
Target:  5'- -gCGCCgCCAg---CGugGCGUCCACg -3'
miRNA:   3'- agGCGGaGGUacagGCugUGCAGGUG- -5'
29564 3' -57.4 NC_006151.1 + 69439 0.66 0.861981
Target:  5'- gCCGCCgCCGUucgcGUCCucGCGCG-CCGCg -3'
miRNA:   3'- aGGCGGaGGUA----CAGGc-UGUGCaGGUG- -5'
29564 3' -57.4 NC_006151.1 + 60603 0.66 0.854352
Target:  5'- gCCGCCUCCAccgCCGuCGuCG-CCGCc -3'
miRNA:   3'- aGGCGGAGGUacaGGCuGU-GCaGGUG- -5'
29564 3' -57.4 NC_006151.1 + 88719 0.66 0.854352
Target:  5'- cUCgGUCUCgGcGUCCGcCGCGgCCACg -3'
miRNA:   3'- -AGgCGGAGgUaCAGGCuGUGCaGGUG- -5'
29564 3' -57.4 NC_006151.1 + 67056 0.66 0.854352
Target:  5'- aCCGCCUaCC-UGcuggcggccUUCGACACG-CCGCu -3'
miRNA:   3'- aGGCGGA-GGuAC---------AGGCUGUGCaGGUG- -5'
29564 3' -57.4 NC_006151.1 + 65901 0.66 0.847317
Target:  5'- gUCCGCCUCCucccccucguccucGUCgGGCGCcccgCCGCc -3'
miRNA:   3'- -AGGCGGAGGua------------CAGgCUGUGca--GGUG- -5'
29564 3' -57.4 NC_006151.1 + 37831 0.66 0.846525
Target:  5'- cUCCGCCgggCCuacgCCGACAUGgccuacccgggCCGCg -3'
miRNA:   3'- -AGGCGGa--GGuacaGGCUGUGCa----------GGUG- -5'
29564 3' -57.4 NC_006151.1 + 35706 0.66 0.846525
Target:  5'- aCCGUCUCCGc-UCCGGCGCGgacucugaagacUCCGg -3'
miRNA:   3'- aGGCGGAGGUacAGGCUGUGC------------AGGUg -5'
29564 3' -57.4 NC_006151.1 + 135472 0.66 0.830307
Target:  5'- -gCGCCagCGUGUCCG-CGCGggCCAg -3'
miRNA:   3'- agGCGGagGUACAGGCuGUGCa-GGUg -5'
29564 3' -57.4 NC_006151.1 + 63306 0.66 0.830307
Target:  5'- aCUGUC-CCAUGUCCGcgACGCGgugaCGCg -3'
miRNA:   3'- aGGCGGaGGUACAGGC--UGUGCag--GUG- -5'
29564 3' -57.4 NC_006151.1 + 40387 0.66 0.830307
Target:  5'- cCCGuCCUCCuccUCCucUGCGUCCGCg -3'
miRNA:   3'- aGGC-GGAGGuacAGGcuGUGCAGGUG- -5'
29564 3' -57.4 NC_006151.1 + 49054 0.67 0.821929
Target:  5'- cUgGCCUUCAgcGUCCGGCGCGgggugCCGa -3'
miRNA:   3'- aGgCGGAGGUa-CAGGCUGUGCa----GGUg -5'
29564 3' -57.4 NC_006151.1 + 117877 0.67 0.813382
Target:  5'- gUUCGCCcCUcgGcgCCGACACcUCCGCc -3'
miRNA:   3'- -AGGCGGaGGuaCa-GGCUGUGcAGGUG- -5'
29564 3' -57.4 NC_006151.1 + 137439 0.67 0.813382
Target:  5'- gUCCGCCUCCGcgGccuccUCCGACgACGgCCuCg -3'
miRNA:   3'- -AGGCGGAGGUa-C-----AGGCUG-UGCaGGuG- -5'
29564 3' -57.4 NC_006151.1 + 66732 0.67 0.804674
Target:  5'- cUUCGCgCUCC-UGUCgCGGCGCuccuUCCGCg -3'
miRNA:   3'- -AGGCG-GAGGuACAG-GCUGUGc---AGGUG- -5'
29564 3' -57.4 NC_006151.1 + 58715 0.67 0.804674
Target:  5'- gUCCGCCagcgcccCCGUG-CCGcuCGCGUCgCGCa -3'
miRNA:   3'- -AGGCGGa------GGUACaGGCu-GUGCAG-GUG- -5'
29564 3' -57.4 NC_006151.1 + 63726 0.67 0.795813
Target:  5'- cCCGUCgaaggcgCCAcaccUCCGGCGCGUCgGCg -3'
miRNA:   3'- aGGCGGa------GGUac--AGGCUGUGCAGgUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.