miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29564 3' -57.4 NC_006151.1 + 2062 0.69 0.700672
Target:  5'- cUCgGCCUCCucgucGUCCGAgAUGgccUCCACc -3'
miRNA:   3'- -AGgCGGAGGua---CAGGCUgUGC---AGGUG- -5'
29564 3' -57.4 NC_006151.1 + 2545 0.67 0.795813
Target:  5'- -gCGCUggcgggCCAUGUCCuuGCAgcCGUCCACg -3'
miRNA:   3'- agGCGGa-----GGUACAGGc-UGU--GCAGGUG- -5'
29564 3' -57.4 NC_006151.1 + 4383 0.68 0.730213
Target:  5'- gUCGCCUCC----CCGGCGCGggggUCCGCg -3'
miRNA:   3'- aGGCGGAGGuacaGGCUGUGC----AGGUG- -5'
29564 3' -57.4 NC_006151.1 + 9115 0.66 0.861981
Target:  5'- cCCGCCUCgCAcucGcCCGACACucgGcCCGCg -3'
miRNA:   3'- aGGCGGAG-GUa--CaGGCUGUG---CaGGUG- -5'
29564 3' -57.4 NC_006151.1 + 11304 0.66 0.869407
Target:  5'- cCCGCuCUCCcgGgCCGcCGCGauaCCGCg -3'
miRNA:   3'- aGGCG-GAGGuaCaGGCuGUGCa--GGUG- -5'
29564 3' -57.4 NC_006151.1 + 21923 0.66 0.869407
Target:  5'- cUCGuCCUCCGUggggaacauguaGUCCgcgGACGgGUCCACc -3'
miRNA:   3'- aGGC-GGAGGUA------------CAGG---CUGUgCAGGUG- -5'
29564 3' -57.4 NC_006151.1 + 24876 0.69 0.670622
Target:  5'- gUCCGCCUcgCCcgG-CCGGCGgG-CCACg -3'
miRNA:   3'- -AGGCGGA--GGuaCaGGCUGUgCaGGUG- -5'
29564 3' -57.4 NC_006151.1 + 28294 0.7 0.650422
Target:  5'- cCCGgCUCCcccauUGgCCGGCGCGUCCcCg -3'
miRNA:   3'- aGGCgGAGGu----ACaGGCUGUGCAGGuG- -5'
29564 3' -57.4 NC_006151.1 + 28565 0.7 0.615982
Target:  5'- cCCGCgUCCcgGgagcccgcauuggCCGGCGCGUCCcCg -3'
miRNA:   3'- aGGCGgAGGuaCa------------GGCUGUGCAGGuG- -5'
29564 3' -57.4 NC_006151.1 + 28854 0.7 0.650422
Target:  5'- cCCGgCUCCcccauUGgCCGGCGCGUCCcCg -3'
miRNA:   3'- aGGCgGAGGu----ACaGGCUGUGCAGGuG- -5'
29564 3' -57.4 NC_006151.1 + 33776 0.69 0.700672
Target:  5'- cCCGCCcgCCccGUCCGAC-CGaCCAUc -3'
miRNA:   3'- aGGCGGa-GGuaCAGGCUGuGCaGGUG- -5'
29564 3' -57.4 NC_006151.1 + 33908 0.7 0.609911
Target:  5'- cUCgCGCCUCCGcGUCCGGCggGCGgaucgaggcCCGCg -3'
miRNA:   3'- -AG-GCGGAGGUaCAGGCUG--UGCa--------GGUG- -5'
29564 3' -57.4 NC_006151.1 + 34545 0.7 0.620033
Target:  5'- gUCGCCggucCCcgGUCCGACgGCGguUCCGCu -3'
miRNA:   3'- aGGCGGa---GGuaCAGGCUG-UGC--AGGUG- -5'
29564 3' -57.4 NC_006151.1 + 35706 0.66 0.846525
Target:  5'- aCCGUCUCCGc-UCCGGCGCGgacucugaagacUCCGg -3'
miRNA:   3'- aGGCGGAGGUacAGGCUGUGC------------AGGUg -5'
29564 3' -57.4 NC_006151.1 + 37164 0.67 0.777664
Target:  5'- aCCGUCUCCg---CCGGCGCccgCCGCg -3'
miRNA:   3'- aGGCGGAGGuacaGGCUGUGca-GGUG- -5'
29564 3' -57.4 NC_006151.1 + 37209 0.68 0.759005
Target:  5'- cUCCGCCUCCuccUCCGcCGCGgCCu- -3'
miRNA:   3'- -AGGCGGAGGuacAGGCuGUGCaGGug -5'
29564 3' -57.4 NC_006151.1 + 37374 0.72 0.510677
Target:  5'- cUCCGacCCUCCGg--CCGACggccGCGUCCGCu -3'
miRNA:   3'- -AGGC--GGAGGUacaGGCUG----UGCAGGUG- -5'
29564 3' -57.4 NC_006151.1 + 37831 0.66 0.846525
Target:  5'- cUCCGCCgggCCuacgCCGACAUGgccuacccgggCCGCg -3'
miRNA:   3'- -AGGCGGa--GGuacaGGCUGUGCa----------GGUG- -5'
29564 3' -57.4 NC_006151.1 + 40387 0.66 0.830307
Target:  5'- cCCGuCCUCCuccUCCucUGCGUCCGCg -3'
miRNA:   3'- aGGC-GGAGGuacAGGcuGUGCAGGUG- -5'
29564 3' -57.4 NC_006151.1 + 48709 0.69 0.700672
Target:  5'- cUCCGCCgccgCCcgGcCCGcgaaggGCACGcCCGCg -3'
miRNA:   3'- -AGGCGGa---GGuaCaGGC------UGUGCaGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.