miRNA display CGI


Results 21 - 40 of 65 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29564 3' -57.4 NC_006151.1 + 49054 0.67 0.821929
Target:  5'- cUgGCCUUCAgcGUCCGGCGCGgggugCCGa -3'
miRNA:   3'- aGgCGGAGGUa-CAGGCUGUGCa----GGUg -5'
29564 3' -57.4 NC_006151.1 + 51298 0.68 0.739905
Target:  5'- gCCGCCggCCAgGUCCG-CGCGaaCACg -3'
miRNA:   3'- aGGCGGa-GGUaCAGGCuGUGCagGUG- -5'
29564 3' -57.4 NC_006151.1 + 57529 0.68 0.768394
Target:  5'- gCCGCCUCCGgcgcggCCGcggGCACGUCg-- -3'
miRNA:   3'- aGGCGGAGGUaca---GGC---UGUGCAGgug -5'
29564 3' -57.4 NC_006151.1 + 58002 0.67 0.795813
Target:  5'- aCCGCCUCCGg--CgCGGCcGCGgCCACc -3'
miRNA:   3'- aGGCGGAGGUacaG-GCUG-UGCaGGUG- -5'
29564 3' -57.4 NC_006151.1 + 58715 0.67 0.804674
Target:  5'- gUCCGCCagcgcccCCGUG-CCGcuCGCGUCgCGCa -3'
miRNA:   3'- -AGGCGGa------GGUACaGGCu-GUGCAG-GUG- -5'
29564 3' -57.4 NC_006151.1 + 60603 0.66 0.854352
Target:  5'- gCCGCCUCCAccgCCGuCGuCG-CCGCc -3'
miRNA:   3'- aGGCGGAGGUacaGGCuGU-GCaGGUG- -5'
29564 3' -57.4 NC_006151.1 + 61847 0.67 0.795813
Target:  5'- gCCGCC-CCGgggacccugaUGcUCGGCGCGUCUGCg -3'
miRNA:   3'- aGGCGGaGGU----------ACaGGCUGUGCAGGUG- -5'
29564 3' -57.4 NC_006151.1 + 63306 0.66 0.830307
Target:  5'- aCUGUC-CCAUGUCCGcgACGCGgugaCGCg -3'
miRNA:   3'- aGGCGGaGGUACAGGC--UGUGCag--GUG- -5'
29564 3' -57.4 NC_006151.1 + 63726 0.67 0.795813
Target:  5'- cCCGUCgaaggcgCCAcaccUCCGGCGCGUCgGCg -3'
miRNA:   3'- aGGCGGa------GGUac--AGGCUGUGCAGgUG- -5'
29564 3' -57.4 NC_006151.1 + 64446 0.71 0.55869
Target:  5'- gCCGCCUCCAccGUCaggauggCGGCGCGcgCCGCc -3'
miRNA:   3'- aGGCGGAGGUa-CAG-------GCUGUGCa-GGUG- -5'
29564 3' -57.4 NC_006151.1 + 65901 0.66 0.847317
Target:  5'- gUCCGCCUCCucccccucguccucGUCgGGCGCcccgCCGCc -3'
miRNA:   3'- -AGGCGGAGGua------------CAGgCUGUGca--GGUG- -5'
29564 3' -57.4 NC_006151.1 + 66732 0.67 0.804674
Target:  5'- cUUCGCgCUCC-UGUCgCGGCGCuccuUCCGCg -3'
miRNA:   3'- -AGGCG-GAGGuACAG-GCUGUGc---AGGUG- -5'
29564 3' -57.4 NC_006151.1 + 67056 0.66 0.854352
Target:  5'- aCCGCCUaCC-UGcuggcggccUUCGACACG-CCGCu -3'
miRNA:   3'- aGGCGGA-GGuAC---------AGGCUGUGCaGGUG- -5'
29564 3' -57.4 NC_006151.1 + 69439 0.66 0.861981
Target:  5'- gCCGCCgCCGUucgcGUCCucGCGCG-CCGCg -3'
miRNA:   3'- aGGCGGaGGUA----CAGGc-UGUGCaGGUG- -5'
29564 3' -57.4 NC_006151.1 + 69508 0.72 0.530088
Target:  5'- gCCGCCUCCuccgCCGcCGCG-CCGCg -3'
miRNA:   3'- aGGCGGAGGuacaGGCuGUGCaGGUG- -5'
29564 3' -57.4 NC_006151.1 + 70725 0.67 0.795813
Target:  5'- gCCGCCUgC-UGgCCGGCACG-CUGCa -3'
miRNA:   3'- aGGCGGAgGuACaGGCUGUGCaGGUG- -5'
29564 3' -57.4 NC_006151.1 + 72326 0.68 0.730213
Target:  5'- gCCGCCggucagCCAUGgCCGcgaGCACGUcgCCGCc -3'
miRNA:   3'- aGGCGGa-----GGUACaGGC---UGUGCA--GGUG- -5'
29564 3' -57.4 NC_006151.1 + 73307 0.68 0.768394
Target:  5'- gUCCGCgUCCGcGUCCaGCAUGggcggggcgCCGCg -3'
miRNA:   3'- -AGGCGgAGGUaCAGGcUGUGCa--------GGUG- -5'
29564 3' -57.4 NC_006151.1 + 75284 0.66 0.861981
Target:  5'- -gCGCCgCCAg---CGugGCGUCCACg -3'
miRNA:   3'- agGCGGaGGUacagGCugUGCAGGUG- -5'
29564 3' -57.4 NC_006151.1 + 75780 0.69 0.6907
Target:  5'- gUCCGCgUgCGUGUCCGccaGCGUCagCACg -3'
miRNA:   3'- -AGGCGgAgGUACAGGCug-UGCAG--GUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.