Results 21 - 40 of 65 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29564 | 3' | -57.4 | NC_006151.1 | + | 63726 | 0.67 | 0.795813 |
Target: 5'- cCCGUCgaaggcgCCAcaccUCCGGCGCGUCgGCg -3' miRNA: 3'- aGGCGGa------GGUac--AGGCUGUGCAGgUG- -5' |
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29564 | 3' | -57.4 | NC_006151.1 | + | 82308 | 0.67 | 0.795813 |
Target: 5'- -gCGCCUCCGcGUCCGcgaGgACGgCCACc -3' miRNA: 3'- agGCGGAGGUaCAGGC---UgUGCaGGUG- -5' |
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29564 | 3' | -57.4 | NC_006151.1 | + | 65901 | 0.66 | 0.847317 |
Target: 5'- gUCCGCCUCCucccccucguccucGUCgGGCGCcccgCCGCc -3' miRNA: 3'- -AGGCGGAGGua------------CAGgCUGUGca--GGUG- -5' |
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29564 | 3' | -57.4 | NC_006151.1 | + | 60603 | 0.66 | 0.854352 |
Target: 5'- gCCGCCUCCAccgCCGuCGuCG-CCGCc -3' miRNA: 3'- aGGCGGAGGUacaGGCuGU-GCaGGUG- -5' |
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29564 | 3' | -57.4 | NC_006151.1 | + | 88719 | 0.66 | 0.854352 |
Target: 5'- cUCgGUCUCgGcGUCCGcCGCGgCCACg -3' miRNA: 3'- -AGgCGGAGgUaCAGGCuGUGCaGGUG- -5' |
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29564 | 3' | -57.4 | NC_006151.1 | + | 67056 | 0.66 | 0.854352 |
Target: 5'- aCCGCCUaCC-UGcuggcggccUUCGACACG-CCGCu -3' miRNA: 3'- aGGCGGA-GGuAC---------AGGCUGUGCaGGUG- -5' |
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29564 | 3' | -57.4 | NC_006151.1 | + | 69439 | 0.66 | 0.861981 |
Target: 5'- gCCGCCgCCGUucgcGUCCucGCGCG-CCGCg -3' miRNA: 3'- aGGCGGaGGUA----CAGGc-UGUGCaGGUG- -5' |
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29564 | 3' | -57.4 | NC_006151.1 | + | 75284 | 0.66 | 0.861981 |
Target: 5'- -gCGCCgCCAg---CGugGCGUCCACg -3' miRNA: 3'- agGCGGaGGUacagGCugUGCAGGUG- -5' |
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29564 | 3' | -57.4 | NC_006151.1 | + | 9115 | 0.66 | 0.861981 |
Target: 5'- cCCGCCUCgCAcucGcCCGACACucgGcCCGCg -3' miRNA: 3'- aGGCGGAG-GUa--CaGGCUGUG---CaGGUG- -5' |
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29564 | 3' | -57.4 | NC_006151.1 | + | 21923 | 0.66 | 0.869407 |
Target: 5'- cUCGuCCUCCGUggggaacauguaGUCCgcgGACGgGUCCACc -3' miRNA: 3'- aGGC-GGAGGUA------------CAGG---CUGUgCAGGUG- -5' |
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29564 | 3' | -57.4 | NC_006151.1 | + | 35706 | 0.66 | 0.846525 |
Target: 5'- aCCGUCUCCGc-UCCGGCGCGgacucugaagacUCCGg -3' miRNA: 3'- aGGCGGAGGUacAGGCUGUGC------------AGGUg -5' |
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29564 | 3' | -57.4 | NC_006151.1 | + | 37831 | 0.66 | 0.846525 |
Target: 5'- cUCCGCCgggCCuacgCCGACAUGgccuacccgggCCGCg -3' miRNA: 3'- -AGGCGGa--GGuacaGGCUGUGCa----------GGUG- -5' |
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29564 | 3' | -57.4 | NC_006151.1 | + | 58715 | 0.67 | 0.804674 |
Target: 5'- gUCCGCCagcgcccCCGUG-CCGcuCGCGUCgCGCa -3' miRNA: 3'- -AGGCGGa------GGUACaGGCu-GUGCAG-GUG- -5' |
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29564 | 3' | -57.4 | NC_006151.1 | + | 66732 | 0.67 | 0.804674 |
Target: 5'- cUUCGCgCUCC-UGUCgCGGCGCuccuUCCGCg -3' miRNA: 3'- -AGGCG-GAGGuACAG-GCUGUGc---AGGUG- -5' |
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29564 | 3' | -57.4 | NC_006151.1 | + | 117877 | 0.67 | 0.813382 |
Target: 5'- gUUCGCCcCUcgGcgCCGACACcUCCGCc -3' miRNA: 3'- -AGGCGGaGGuaCa-GGCUGUGcAGGUG- -5' |
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29564 | 3' | -57.4 | NC_006151.1 | + | 137439 | 0.67 | 0.813382 |
Target: 5'- gUCCGCCUCCGcgGccuccUCCGACgACGgCCuCg -3' miRNA: 3'- -AGGCGGAGGUa-C-----AGGCUG-UGCaGGuG- -5' |
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29564 | 3' | -57.4 | NC_006151.1 | + | 49054 | 0.67 | 0.821929 |
Target: 5'- cUgGCCUUCAgcGUCCGGCGCGgggugCCGa -3' miRNA: 3'- aGgCGGAGGUa-CAGGCUGUGCa----GGUg -5' |
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29564 | 3' | -57.4 | NC_006151.1 | + | 40387 | 0.66 | 0.830307 |
Target: 5'- cCCGuCCUCCuccUCCucUGCGUCCGCg -3' miRNA: 3'- aGGC-GGAGGuacAGGcuGUGCAGGUG- -5' |
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29564 | 3' | -57.4 | NC_006151.1 | + | 63306 | 0.66 | 0.830307 |
Target: 5'- aCUGUC-CCAUGUCCGcgACGCGgugaCGCg -3' miRNA: 3'- aGGCGGaGGUACAGGC--UGUGCag--GUG- -5' |
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29564 | 3' | -57.4 | NC_006151.1 | + | 135472 | 0.66 | 0.830307 |
Target: 5'- -gCGCCagCGUGUCCG-CGCGggCCAg -3' miRNA: 3'- agGCGGagGUACAGGCuGUGCa-GGUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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