Results 21 - 40 of 65 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29564 | 3' | -57.4 | NC_006151.1 | + | 33776 | 0.69 | 0.700672 |
Target: 5'- cCCGCCcgCCccGUCCGAC-CGaCCAUc -3' miRNA: 3'- aGGCGGa-GGuaCAGGCUGuGCaGGUG- -5' |
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29564 | 3' | -57.4 | NC_006151.1 | + | 2062 | 0.69 | 0.700672 |
Target: 5'- cUCgGCCUCCucgucGUCCGAgAUGgccUCCACc -3' miRNA: 3'- -AGgCGGAGGua---CAGGCUgUGC---AGGUG- -5' |
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29564 | 3' | -57.4 | NC_006151.1 | + | 136807 | 0.68 | 0.720437 |
Target: 5'- gCCGCgCUCgCGg--CCGACGCG-CCGCg -3' miRNA: 3'- aGGCG-GAG-GUacaGGCUGUGCaGGUG- -5' |
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29564 | 3' | -57.4 | NC_006151.1 | + | 72326 | 0.68 | 0.730213 |
Target: 5'- gCCGCCggucagCCAUGgCCGcgaGCACGUcgCCGCc -3' miRNA: 3'- aGGCGGa-----GGUACaGGC---UGUGCA--GGUG- -5' |
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29564 | 3' | -57.4 | NC_006151.1 | + | 4383 | 0.68 | 0.730213 |
Target: 5'- gUCGCCUCC----CCGGCGCGggggUCCGCg -3' miRNA: 3'- aGGCGGAGGuacaGGCUGUGC----AGGUG- -5' |
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29564 | 3' | -57.4 | NC_006151.1 | + | 51298 | 0.68 | 0.739905 |
Target: 5'- gCCGCCggCCAgGUCCG-CGCGaaCACg -3' miRNA: 3'- aGGCGGa-GGUaCAGGCuGUGCagGUG- -5' |
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29564 | 3' | -57.4 | NC_006151.1 | + | 102347 | 0.68 | 0.749506 |
Target: 5'- gCUGCUggaCGUGgccggcgaCGACGCGUCCGCg -3' miRNA: 3'- aGGCGGag-GUACag------GCUGUGCAGGUG- -5' |
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29564 | 3' | -57.4 | NC_006151.1 | + | 37209 | 0.68 | 0.759005 |
Target: 5'- cUCCGCCUCCuccUCCGcCGCGgCCu- -3' miRNA: 3'- -AGGCGGAGGuacAGGCuGUGCaGGug -5' |
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29564 | 3' | -57.4 | NC_006151.1 | + | 57529 | 0.68 | 0.768394 |
Target: 5'- gCCGCCUCCGgcgcggCCGcggGCACGUCg-- -3' miRNA: 3'- aGGCGGAGGUaca---GGC---UGUGCAGgug -5' |
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29564 | 3' | -57.4 | NC_006151.1 | + | 123361 | 0.68 | 0.768394 |
Target: 5'- gCCGCgCUCCu--UCCGGC-CGUCaCGCg -3' miRNA: 3'- aGGCG-GAGGuacAGGCUGuGCAG-GUG- -5' |
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29564 | 3' | -57.4 | NC_006151.1 | + | 135339 | 0.68 | 0.768394 |
Target: 5'- gCCGCCaggCaCGUGUCCGcgagccgccGCGCGUuggCCGCg -3' miRNA: 3'- aGGCGGa--G-GUACAGGC---------UGUGCA---GGUG- -5' |
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29564 | 3' | -57.4 | NC_006151.1 | + | 137311 | 0.68 | 0.768394 |
Target: 5'- uUCCGCCgcgCgGUGcUCGACGCGcUCGCg -3' miRNA: 3'- -AGGCGGa--GgUACaGGCUGUGCaGGUG- -5' |
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29564 | 3' | -57.4 | NC_006151.1 | + | 139892 | 0.68 | 0.768394 |
Target: 5'- cCCGCC-CCGUGUUcaaCGACgGCuUCCGCg -3' miRNA: 3'- aGGCGGaGGUACAG---GCUG-UGcAGGUG- -5' |
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29564 | 3' | -57.4 | NC_006151.1 | + | 73307 | 0.68 | 0.768394 |
Target: 5'- gUCCGCgUCCGcGUCCaGCAUGggcggggcgCCGCg -3' miRNA: 3'- -AGGCGgAGGUaCAGGcUGUGCa--------GGUG- -5' |
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29564 | 3' | -57.4 | NC_006151.1 | + | 108535 | 0.68 | 0.768394 |
Target: 5'- cCCGCuCUCCuccgGggacaucggacUCCGAgccCGCGUCCGCg -3' miRNA: 3'- aGGCG-GAGGua--C-----------AGGCU---GUGCAGGUG- -5' |
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29564 | 3' | -57.4 | NC_006151.1 | + | 37164 | 0.67 | 0.777664 |
Target: 5'- aCCGUCUCCg---CCGGCGCccgCCGCg -3' miRNA: 3'- aGGCGGAGGuacaGGCUGUGca-GGUG- -5' |
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29564 | 3' | -57.4 | NC_006151.1 | + | 93224 | 0.67 | 0.777664 |
Target: 5'- aCCGCCUCCcacucUGcgCCGGC-CG-CCACc -3' miRNA: 3'- aGGCGGAGGu----ACa-GGCUGuGCaGGUG- -5' |
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29564 | 3' | -57.4 | NC_006151.1 | + | 142172 | 0.67 | 0.781337 |
Target: 5'- gUCCaCCUCCAUGggcUCCGacucgggcucgacguGCuCGUCCACc -3' miRNA: 3'- -AGGcGGAGGUAC---AGGC---------------UGuGCAGGUG- -5' |
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29564 | 3' | -57.4 | NC_006151.1 | + | 95144 | 0.67 | 0.786807 |
Target: 5'- gCCGCCgggucggCCAUGUCC---AUGUCCAg -3' miRNA: 3'- aGGCGGa------GGUACAGGcugUGCAGGUg -5' |
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29564 | 3' | -57.4 | NC_006151.1 | + | 104355 | 0.67 | 0.786807 |
Target: 5'- gUCGCuCUUCGgcgCCGACACGgagCCGCu -3' miRNA: 3'- aGGCG-GAGGUacaGGCUGUGCa--GGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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