miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29564 3' -57.4 NC_006151.1 + 37164 0.67 0.777664
Target:  5'- aCCGUCUCCg---CCGGCGCccgCCGCg -3'
miRNA:   3'- aGGCGGAGGuacaGGCUGUGca-GGUG- -5'
29564 3' -57.4 NC_006151.1 + 58002 0.67 0.795813
Target:  5'- aCCGCCUCCGg--CgCGGCcGCGgCCACc -3'
miRNA:   3'- aGGCGGAGGUacaG-GCUG-UGCaGGUG- -5'
29564 3' -57.4 NC_006151.1 + 61847 0.67 0.795813
Target:  5'- gCCGCC-CCGgggacccugaUGcUCGGCGCGUCUGCg -3'
miRNA:   3'- aGGCGGaGGU----------ACaGGCUGUGCAGGUG- -5'
29564 3' -57.4 NC_006151.1 + 49054 0.67 0.821929
Target:  5'- cUgGCCUUCAgcGUCCGGCGCGgggugCCGa -3'
miRNA:   3'- aGgCGGAGGUa-CAGGCUGUGCa----GGUg -5'
29564 3' -57.4 NC_006151.1 + 137439 0.67 0.813382
Target:  5'- gUCCGCCUCCGcgGccuccUCCGACgACGgCCuCg -3'
miRNA:   3'- -AGGCGGAGGUa-C-----AGGCUG-UGCaGGuG- -5'
29564 3' -57.4 NC_006151.1 + 117877 0.67 0.813382
Target:  5'- gUUCGCCcCUcgGcgCCGACACcUCCGCc -3'
miRNA:   3'- -AGGCGGaGGuaCa-GGCUGUGcAGGUG- -5'
29564 3' -57.4 NC_006151.1 + 66732 0.67 0.804674
Target:  5'- cUUCGCgCUCC-UGUCgCGGCGCuccuUCCGCg -3'
miRNA:   3'- -AGGCG-GAGGuACAG-GCUGUGc---AGGUG- -5'
29564 3' -57.4 NC_006151.1 + 58715 0.67 0.804674
Target:  5'- gUCCGCCagcgcccCCGUG-CCGcuCGCGUCgCGCa -3'
miRNA:   3'- -AGGCGGa------GGUACaGGCu-GUGCAG-GUG- -5'
29564 3' -57.4 NC_006151.1 + 82308 0.67 0.795813
Target:  5'- -gCGCCUCCGcGUCCGcgaGgACGgCCACc -3'
miRNA:   3'- agGCGGAGGUaCAGGC---UgUGCaGGUG- -5'
29564 3' -57.4 NC_006151.1 + 63726 0.67 0.795813
Target:  5'- cCCGUCgaaggcgCCAcaccUCCGGCGCGUCgGCg -3'
miRNA:   3'- aGGCGGa------GGUac--AGGCUGUGCAGgUG- -5'
29564 3' -57.4 NC_006151.1 + 51298 0.68 0.739905
Target:  5'- gCCGCCggCCAgGUCCG-CGCGaaCACg -3'
miRNA:   3'- aGGCGGa-GGUaCAGGCuGUGCagGUG- -5'
29564 3' -57.4 NC_006151.1 + 102347 0.68 0.749506
Target:  5'- gCUGCUggaCGUGgccggcgaCGACGCGUCCGCg -3'
miRNA:   3'- aGGCGGag-GUACag------GCUGUGCAGGUG- -5'
29564 3' -57.4 NC_006151.1 + 37209 0.68 0.759005
Target:  5'- cUCCGCCUCCuccUCCGcCGCGgCCu- -3'
miRNA:   3'- -AGGCGGAGGuacAGGCuGUGCaGGug -5'
29564 3' -57.4 NC_006151.1 + 57529 0.68 0.768394
Target:  5'- gCCGCCUCCGgcgcggCCGcggGCACGUCg-- -3'
miRNA:   3'- aGGCGGAGGUaca---GGC---UGUGCAGgug -5'
29564 3' -57.4 NC_006151.1 + 123361 0.68 0.768394
Target:  5'- gCCGCgCUCCu--UCCGGC-CGUCaCGCg -3'
miRNA:   3'- aGGCG-GAGGuacAGGCUGuGCAG-GUG- -5'
29564 3' -57.4 NC_006151.1 + 135339 0.68 0.768394
Target:  5'- gCCGCCaggCaCGUGUCCGcgagccgccGCGCGUuggCCGCg -3'
miRNA:   3'- aGGCGGa--G-GUACAGGC---------UGUGCA---GGUG- -5'
29564 3' -57.4 NC_006151.1 + 137311 0.68 0.768394
Target:  5'- uUCCGCCgcgCgGUGcUCGACGCGcUCGCg -3'
miRNA:   3'- -AGGCGGa--GgUACaGGCUGUGCaGGUG- -5'
29564 3' -57.4 NC_006151.1 + 139892 0.68 0.768394
Target:  5'- cCCGCC-CCGUGUUcaaCGACgGCuUCCGCg -3'
miRNA:   3'- aGGCGGaGGUACAG---GCUG-UGcAGGUG- -5'
29564 3' -57.4 NC_006151.1 + 73307 0.68 0.768394
Target:  5'- gUCCGCgUCCGcGUCCaGCAUGggcggggcgCCGCg -3'
miRNA:   3'- -AGGCGgAGGUaCAGGcUGUGCa--------GGUG- -5'
29564 3' -57.4 NC_006151.1 + 4383 0.68 0.730213
Target:  5'- gUCGCCUCC----CCGGCGCGggggUCCGCg -3'
miRNA:   3'- aGGCGGAGGuacaGGCUGUGC----AGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.