miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29564 3' -57.4 NC_006151.1 + 82968 0.75 0.376767
Target:  5'- cUCCGucaCCUCCAUG-CCG-CGCGUCUGCg -3'
miRNA:   3'- -AGGC---GGAGGUACaGGCuGUGCAGGUG- -5'
29564 3' -57.4 NC_006151.1 + 37374 0.72 0.510677
Target:  5'- cUCCGacCCUCCGg--CCGACggccGCGUCCGCu -3'
miRNA:   3'- -AGGC--GGAGGUacaGGCUG----UGCAGGUG- -5'
29564 3' -57.4 NC_006151.1 + 84928 0.72 0.520347
Target:  5'- gCCGCCUCCggcGUGcucUUCGGCACGUgguacgCCACg -3'
miRNA:   3'- aGGCGGAGG---UAC---AGGCUGUGCA------GGUG- -5'
29564 3' -57.4 NC_006151.1 + 69508 0.72 0.530088
Target:  5'- gCCGCCUCCuccgCCGcCGCG-CCGCg -3'
miRNA:   3'- aGGCGGAGGuacaGGCuGUGCaGGUG- -5'
29564 3' -57.4 NC_006151.1 + 135193 0.72 0.539895
Target:  5'- gCCGCCgggCCA-GUCCca-GCGUCCGCu -3'
miRNA:   3'- aGGCGGa--GGUaCAGGcugUGCAGGUG- -5'
29564 3' -57.4 NC_006151.1 + 64446 0.71 0.55869
Target:  5'- gCCGCCUCCAccGUCaggauggCGGCGCGcgCCGCc -3'
miRNA:   3'- aGGCGGAGGUa-CAG-------GCUGUGCa-GGUG- -5'
29564 3' -57.4 NC_006151.1 + 77182 0.71 0.569657
Target:  5'- gCCGCgUCCAcGUCCGccgcCGCGUCCu- -3'
miRNA:   3'- aGGCGgAGGUaCAGGCu---GUGCAGGug -5'
29564 3' -57.4 NC_006151.1 + 33908 0.7 0.609911
Target:  5'- cUCgCGCCUCCGcGUCCGGCggGCGgaucgaggcCCGCg -3'
miRNA:   3'- -AG-GCGGAGGUaCAGGCUG--UGCa--------GGUG- -5'
29564 3' -57.4 NC_006151.1 + 28565 0.7 0.615982
Target:  5'- cCCGCgUCCcgGgagcccgcauuggCCGGCGCGUCCcCg -3'
miRNA:   3'- aGGCGgAGGuaCa------------GGCUGUGCAGGuG- -5'
29564 3' -57.4 NC_006151.1 + 131062 0.7 0.620033
Target:  5'- gCCGUCUCCAUG-CCGcggaggGCGCGcgacagguagUCCACg -3'
miRNA:   3'- aGGCGGAGGUACaGGC------UGUGC----------AGGUG- -5'
29564 3' -57.4 NC_006151.1 + 34545 0.7 0.620033
Target:  5'- gUCGCCggucCCcgGUCCGACgGCGguUCCGCu -3'
miRNA:   3'- aGGCGGa---GGuaCAGGCUG-UGC--AGGUG- -5'
29564 3' -57.4 NC_006151.1 + 28854 0.7 0.650422
Target:  5'- cCCGgCUCCcccauUGgCCGGCGCGUCCcCg -3'
miRNA:   3'- aGGCgGAGGu----ACaGGCUGUGCAGGuG- -5'
29564 3' -57.4 NC_006151.1 + 28294 0.7 0.650422
Target:  5'- cCCGgCUCCcccauUGgCCGGCGCGUCCcCg -3'
miRNA:   3'- aGGCgGAGGu----ACaGGCUGUGCAGGuG- -5'
29564 3' -57.4 NC_006151.1 + 88401 0.7 0.660533
Target:  5'- gUCCGCggCCGcgagGcCCGGgACGUCCGCg -3'
miRNA:   3'- -AGGCGgaGGUa---CaGGCUgUGCAGGUG- -5'
29564 3' -57.4 NC_006151.1 + 24876 0.69 0.670622
Target:  5'- gUCCGCCUcgCCcgG-CCGGCGgG-CCACg -3'
miRNA:   3'- -AGGCGGA--GGuaCaGGCUGUgCaGGUG- -5'
29564 3' -57.4 NC_006151.1 + 137729 0.69 0.6907
Target:  5'- gUCGCCguacgCgGUGgccggcgCCGACACgGUCCGCg -3'
miRNA:   3'- aGGCGGa----GgUACa------GGCUGUG-CAGGUG- -5'
29564 3' -57.4 NC_006151.1 + 96376 0.69 0.6907
Target:  5'- gCCGCCUCCAcgcgcgcgcggUG-CCGgcGCACGgcggCCGCc -3'
miRNA:   3'- aGGCGGAGGU-----------ACaGGC--UGUGCa---GGUG- -5'
29564 3' -57.4 NC_006151.1 + 97656 0.69 0.6907
Target:  5'- gCCGCCUCC-UGgUCGcCGCGggCCACg -3'
miRNA:   3'- aGGCGGAGGuACaGGCuGUGCa-GGUG- -5'
29564 3' -57.4 NC_006151.1 + 75780 0.69 0.6907
Target:  5'- gUCCGCgUgCGUGUCCGccaGCGUCagCACg -3'
miRNA:   3'- -AGGCGgAgGUACAGGCug-UGCAG--GUG- -5'
29564 3' -57.4 NC_006151.1 + 2062 0.69 0.700672
Target:  5'- cUCgGCCUCCucgucGUCCGAgAUGgccUCCACc -3'
miRNA:   3'- -AGgCGGAGGua---CAGGCUgUGC---AGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.