miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29564 3' -57.4 NC_006151.1 + 142172 0.67 0.781337
Target:  5'- gUCCaCCUCCAUGggcUCCGacucgggcucgacguGCuCGUCCACc -3'
miRNA:   3'- -AGGcGGAGGUAC---AGGC---------------UGuGCAGGUG- -5'
29564 3' -57.4 NC_006151.1 + 139892 0.68 0.768394
Target:  5'- cCCGCC-CCGUGUUcaaCGACgGCuUCCGCg -3'
miRNA:   3'- aGGCGGaGGUACAG---GCUG-UGcAGGUG- -5'
29564 3' -57.4 NC_006151.1 + 137729 0.69 0.6907
Target:  5'- gUCGCCguacgCgGUGgccggcgCCGACACgGUCCGCg -3'
miRNA:   3'- aGGCGGa----GgUACa------GGCUGUG-CAGGUG- -5'
29564 3' -57.4 NC_006151.1 + 137439 0.67 0.813382
Target:  5'- gUCCGCCUCCGcgGccuccUCCGACgACGgCCuCg -3'
miRNA:   3'- -AGGCGGAGGUa-C-----AGGCUG-UGCaGGuG- -5'
29564 3' -57.4 NC_006151.1 + 137311 0.68 0.768394
Target:  5'- uUCCGCCgcgCgGUGcUCGACGCGcUCGCg -3'
miRNA:   3'- -AGGCGGa--GgUACaGGCUGUGCaGGUG- -5'
29564 3' -57.4 NC_006151.1 + 136807 0.68 0.720437
Target:  5'- gCCGCgCUCgCGg--CCGACGCG-CCGCg -3'
miRNA:   3'- aGGCG-GAG-GUacaGGCUGUGCaGGUG- -5'
29564 3' -57.4 NC_006151.1 + 135472 0.66 0.830307
Target:  5'- -gCGCCagCGUGUCCG-CGCGggCCAg -3'
miRNA:   3'- agGCGGagGUACAGGCuGUGCa-GGUg -5'
29564 3' -57.4 NC_006151.1 + 135339 0.68 0.768394
Target:  5'- gCCGCCaggCaCGUGUCCGcgagccgccGCGCGUuggCCGCg -3'
miRNA:   3'- aGGCGGa--G-GUACAGGC---------UGUGCA---GGUG- -5'
29564 3' -57.4 NC_006151.1 + 135193 0.72 0.539895
Target:  5'- gCCGCCgggCCA-GUCCca-GCGUCCGCu -3'
miRNA:   3'- aGGCGGa--GGUaCAGGcugUGCAGGUG- -5'
29564 3' -57.4 NC_006151.1 + 131062 0.7 0.620033
Target:  5'- gCCGUCUCCAUG-CCGcggaggGCGCGcgacagguagUCCACg -3'
miRNA:   3'- aGGCGGAGGUACaGGC------UGUGC----------AGGUG- -5'
29564 3' -57.4 NC_006151.1 + 123361 0.68 0.768394
Target:  5'- gCCGCgCUCCu--UCCGGC-CGUCaCGCg -3'
miRNA:   3'- aGGCG-GAGGuacAGGCUGuGCAG-GUG- -5'
29564 3' -57.4 NC_006151.1 + 117877 0.67 0.813382
Target:  5'- gUUCGCCcCUcgGcgCCGACACcUCCGCc -3'
miRNA:   3'- -AGGCGGaGGuaCa-GGCUGUGcAGGUG- -5'
29564 3' -57.4 NC_006151.1 + 108535 0.68 0.768394
Target:  5'- cCCGCuCUCCuccgGggacaucggacUCCGAgccCGCGUCCGCg -3'
miRNA:   3'- aGGCG-GAGGua--C-----------AGGCU---GUGCAGGUG- -5'
29564 3' -57.4 NC_006151.1 + 104355 0.67 0.786807
Target:  5'- gUCGCuCUUCGgcgCCGACACGgagCCGCu -3'
miRNA:   3'- aGGCG-GAGGUacaGGCUGUGCa--GGUG- -5'
29564 3' -57.4 NC_006151.1 + 102347 0.68 0.749506
Target:  5'- gCUGCUggaCGUGgccggcgaCGACGCGUCCGCg -3'
miRNA:   3'- aGGCGGag-GUACag------GCUGUGCAGGUG- -5'
29564 3' -57.4 NC_006151.1 + 97656 0.69 0.6907
Target:  5'- gCCGCCUCC-UGgUCGcCGCGggCCACg -3'
miRNA:   3'- aGGCGGAGGuACaGGCuGUGCa-GGUG- -5'
29564 3' -57.4 NC_006151.1 + 96376 0.69 0.6907
Target:  5'- gCCGCCUCCAcgcgcgcgcggUG-CCGgcGCACGgcggCCGCc -3'
miRNA:   3'- aGGCGGAGGU-----------ACaGGC--UGUGCa---GGUG- -5'
29564 3' -57.4 NC_006151.1 + 95144 0.67 0.786807
Target:  5'- gCCGCCgggucggCCAUGUCC---AUGUCCAg -3'
miRNA:   3'- aGGCGGa------GGUACAGGcugUGCAGGUg -5'
29564 3' -57.4 NC_006151.1 + 93224 0.67 0.777664
Target:  5'- aCCGCCUCCcacucUGcgCCGGC-CG-CCACc -3'
miRNA:   3'- aGGCGGAGGu----ACa-GGCUGuGCaGGUG- -5'
29564 3' -57.4 NC_006151.1 + 88719 0.66 0.854352
Target:  5'- cUCgGUCUCgGcGUCCGcCGCGgCCACg -3'
miRNA:   3'- -AGgCGGAGgUaCAGGCuGUGCaGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.