miRNA display CGI


Results 1 - 20 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29567 5' -54.6 NC_006151.1 + 66774 0.78 0.364248
Target:  5'- gGCCGCccuCGGGACGGCGGCGgcgGCGGc -3'
miRNA:   3'- -UGGUGu--GCUCUGCUGCCGCacaUGUC- -5'
29567 5' -54.6 NC_006151.1 + 21582 0.77 0.396591
Target:  5'- gGCCGCGCGGGgucgaugGCGuACGGCGUGgcgGCGGc -3'
miRNA:   3'- -UGGUGUGCUC-------UGC-UGCCGCACa--UGUC- -5'
29567 5' -54.6 NC_006151.1 + 25293 0.77 0.432522
Target:  5'- gGCCGCG-GGGACGugGGCGaacggGUGCGGu -3'
miRNA:   3'- -UGGUGUgCUCUGCugCCGCa----CAUGUC- -5'
29567 5' -54.6 NC_006151.1 + 97270 0.76 0.44157
Target:  5'- cCCACACGGGcagcgccucgGCGGCgGGCGUGUugAGc -3'
miRNA:   3'- uGGUGUGCUC----------UGCUG-CCGCACAugUC- -5'
29567 5' -54.6 NC_006151.1 + 137163 0.75 0.507693
Target:  5'- gGCCgcGCACGAGcCGGCGGCGcagaUGUACGu -3'
miRNA:   3'- -UGG--UGUGCUCuGCUGCCGC----ACAUGUc -5'
29567 5' -54.6 NC_006151.1 + 26343 0.74 0.547314
Target:  5'- cGCCuCACGGGGCGGCGGCGggccgcGU-CGGg -3'
miRNA:   3'- -UGGuGUGCUCUGCUGCCGCa-----CAuGUC- -5'
29567 5' -54.6 NC_006151.1 + 89389 0.74 0.547314
Target:  5'- -aCGCGCGAG-CGugGGCGUGaauCAGg -3'
miRNA:   3'- ugGUGUGCUCuGCugCCGCACau-GUC- -5'
29567 5' -54.6 NC_006151.1 + 140058 0.74 0.577658
Target:  5'- cGCCAC-CGAGGCGGCGcGCGUGcuccGCGa -3'
miRNA:   3'- -UGGUGuGCUCUGCUGC-CGCACa---UGUc -5'
29567 5' -54.6 NC_006151.1 + 130874 0.73 0.598095
Target:  5'- gACCGCAguGGGCGGCGGCG-GUGgAGg -3'
miRNA:   3'- -UGGUGUgcUCUGCUGCCGCaCAUgUC- -5'
29567 5' -54.6 NC_006151.1 + 103627 0.73 0.628921
Target:  5'- cGCCgACGCGGuGGCGGCGGCGcugGCGGa -3'
miRNA:   3'- -UGG-UGUGCU-CUGCUGCCGCacaUGUC- -5'
29567 5' -54.6 NC_006151.1 + 86733 0.73 0.639212
Target:  5'- cGCCGcCGCGAGGC--CGGCGUGcGCGGa -3'
miRNA:   3'- -UGGU-GUGCUCUGcuGCCGCACaUGUC- -5'
29567 5' -54.6 NC_006151.1 + 99179 0.73 0.639212
Target:  5'- gACCACACGcaGGugGACgccacgGGCGUGUgggaggcgguGCAGg -3'
miRNA:   3'- -UGGUGUGC--UCugCUG------CCGCACA----------UGUC- -5'
29567 5' -54.6 NC_006151.1 + 98336 0.73 0.639212
Target:  5'- gGCCGCgggccGCGAGACGcccGCgGGCGUGcGCGGg -3'
miRNA:   3'- -UGGUG-----UGCUCUGC---UG-CCGCACaUGUC- -5'
29567 5' -54.6 NC_006151.1 + 53394 0.73 0.649497
Target:  5'- aGCCACcaGCaGuAGACGACGGCcGUGaGCAGg -3'
miRNA:   3'- -UGGUG--UG-C-UCUGCUGCCG-CACaUGUC- -5'
29567 5' -54.6 NC_006151.1 + 113014 0.72 0.659768
Target:  5'- gACCACACG-GGCGACGacGCGUGcgcCGGg -3'
miRNA:   3'- -UGGUGUGCuCUGCUGC--CGCACau-GUC- -5'
29567 5' -54.6 NC_006151.1 + 51586 0.72 0.659768
Target:  5'- cUCGgGCGGGugGACGGCGggucaGUACAc -3'
miRNA:   3'- uGGUgUGCUCugCUGCCGCa----CAUGUc -5'
29567 5' -54.6 NC_006151.1 + 105712 0.72 0.680234
Target:  5'- gGCCGCGCGccuCGACGGCGccGUGCGc -3'
miRNA:   3'- -UGGUGUGCucuGCUGCCGCa-CAUGUc -5'
29567 5' -54.6 NC_006151.1 + 5240 0.72 0.680234
Target:  5'- cGCCGCGCGGcGGCGGCGGgGgcccgGgggGCGGa -3'
miRNA:   3'- -UGGUGUGCU-CUGCUGCCgCa----Ca--UGUC- -5'
29567 5' -54.6 NC_006151.1 + 102509 0.72 0.680234
Target:  5'- cGCgGCGCGGGAcccCGGCGGCGUcUACGa -3'
miRNA:   3'- -UGgUGUGCUCU---GCUGCCGCAcAUGUc -5'
29567 5' -54.6 NC_006151.1 + 118957 0.72 0.680234
Target:  5'- gUCGCugGAGGCGcucgucgccgcCGGCGUGUACGa -3'
miRNA:   3'- uGGUGugCUCUGCu----------GCCGCACAUGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.