miRNA display CGI


Results 1 - 20 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29567 5' -54.6 NC_006151.1 + 2292 0.67 0.905546
Target:  5'- cGCC-CGCGGcGGCGACGGCGcccgggGU-CAGc -3'
miRNA:   3'- -UGGuGUGCU-CUGCUGCCGCa-----CAuGUC- -5'
29567 5' -54.6 NC_006151.1 + 3132 0.67 0.911662
Target:  5'- gGCCggGCGCGGGGCGcccuCGGCGggcucgGcGCAGa -3'
miRNA:   3'- -UGG--UGUGCUCUGCu---GCCGCa-----CaUGUC- -5'
29567 5' -54.6 NC_006151.1 + 3239 0.68 0.885787
Target:  5'- uCCAgGCGGcGCGGCGGCG-GaGCGGg -3'
miRNA:   3'- uGGUgUGCUcUGCUGCCGCaCaUGUC- -5'
29567 5' -54.6 NC_006151.1 + 5240 0.72 0.680234
Target:  5'- cGCCGCGCGGcGGCGGCGGgGgcccgGgggGCGGa -3'
miRNA:   3'- -UGGUGUGCU-CUGCUGCCgCa----Ca--UGUC- -5'
29567 5' -54.6 NC_006151.1 + 5442 0.66 0.933721
Target:  5'- gGCCGCggGCGAcggucucgacGGCGACGGUGgugGUGgAGu -3'
miRNA:   3'- -UGGUG--UGCU----------CUGCUGCCGCa--CAUgUC- -5'
29567 5' -54.6 NC_006151.1 + 10200 0.68 0.892606
Target:  5'- cGCgGCGCG-GGCGGCGGC---UGCAGa -3'
miRNA:   3'- -UGgUGUGCuCUGCUGCCGcacAUGUC- -5'
29567 5' -54.6 NC_006151.1 + 11686 0.68 0.863991
Target:  5'- cGCCcgACGGGGCcgcggGACGGCGcGUGCGGc -3'
miRNA:   3'- -UGGugUGCUCUG-----CUGCCGCaCAUGUC- -5'
29567 5' -54.6 NC_006151.1 + 18821 0.71 0.750125
Target:  5'- gGCCGCG-GuGGCGACGaGCGUGUAguccCAGg -3'
miRNA:   3'- -UGGUGUgCuCUGCUGC-CGCACAU----GUC- -5'
29567 5' -54.6 NC_006151.1 + 18981 0.66 0.938633
Target:  5'- gGCUGCACGAGGCGuacgcGCGGCGcGccacCAGc -3'
miRNA:   3'- -UGGUGUGCUCUGC-----UGCCGCaCau--GUC- -5'
29567 5' -54.6 NC_006151.1 + 20594 0.7 0.806066
Target:  5'- gGCCGgcacucgucCGCG-GACGACGGCGUGgGguGg -3'
miRNA:   3'- -UGGU---------GUGCuCUGCUGCCGCACaUguC- -5'
29567 5' -54.6 NC_006151.1 + 21317 0.67 0.917538
Target:  5'- gUgGCGCGAGACGcccggcGCGGCGgggGUccGCGGc -3'
miRNA:   3'- uGgUGUGCUCUGC------UGCCGCa--CA--UGUC- -5'
29567 5' -54.6 NC_006151.1 + 21395 0.69 0.840297
Target:  5'- gGCCG-GCGGGGCGAaggGGCG-GUGCGGc -3'
miRNA:   3'- -UGGUgUGCUCUGCUg--CCGCaCAUGUC- -5'
29567 5' -54.6 NC_006151.1 + 21582 0.77 0.396591
Target:  5'- gGCCGCGCGGGgucgaugGCGuACGGCGUGgcgGCGGc -3'
miRNA:   3'- -UGGUGUGCUC-------UGC-UGCCGCACa--UGUC- -5'
29567 5' -54.6 NC_006151.1 + 23002 0.71 0.720614
Target:  5'- gGCCGCGCGGGugGGgGcGCGgggGUGguGg -3'
miRNA:   3'- -UGGUGUGCUCugCUgC-CGCa--CAUguC- -5'
29567 5' -54.6 NC_006151.1 + 23551 0.68 0.871475
Target:  5'- cGCCAaagACGAGcACGAcgauguacaggcCGGCGUcGUACAGc -3'
miRNA:   3'- -UGGUg--UGCUC-UGCU------------GCCGCA-CAUGUC- -5'
29567 5' -54.6 NC_006151.1 + 24216 0.72 0.700541
Target:  5'- aGCCACGCGc-GCGuACuGCGUGUACGGc -3'
miRNA:   3'- -UGGUGUGCucUGC-UGcCGCACAUGUC- -5'
29567 5' -54.6 NC_006151.1 + 25293 0.77 0.432522
Target:  5'- gGCCGCG-GGGACGugGGCGaacggGUGCGGu -3'
miRNA:   3'- -UGGUGUgCUCUGCugCCGCa----CAUGUC- -5'
29567 5' -54.6 NC_006151.1 + 25332 0.66 0.947737
Target:  5'- -gCGC-CGGGACGGcCGGCGUGccGCGa -3'
miRNA:   3'- ugGUGuGCUCUGCU-GCCGCACa-UGUc -5'
29567 5' -54.6 NC_006151.1 + 26343 0.74 0.547314
Target:  5'- cGCCuCACGGGGCGGCGGCGggccgcGU-CGGg -3'
miRNA:   3'- -UGGuGUGCUCUGCUGCCGCa-----CAuGUC- -5'
29567 5' -54.6 NC_006151.1 + 29433 0.68 0.871475
Target:  5'- gGCCGCGgGGGGCGGCGGgGagagGggacGCGGa -3'
miRNA:   3'- -UGGUGUgCUCUGCUGCCgCa---Ca---UGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.