miRNA display CGI


Results 1 - 20 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29567 5' -54.6 NC_006151.1 + 141516 0.71 0.710611
Target:  5'- uCCACGggggcCGAGGCGACGGaCGUGaGCGa -3'
miRNA:   3'- uGGUGU-----GCUCUGCUGCC-GCACaUGUc -5'
29567 5' -54.6 NC_006151.1 + 140058 0.74 0.577658
Target:  5'- cGCCAC-CGAGGCGGCGcGCGUGcuccGCGa -3'
miRNA:   3'- -UGGUGuGCUCUGCUGC-CGCACa---UGUc -5'
29567 5' -54.6 NC_006151.1 + 137163 0.75 0.507693
Target:  5'- gGCCgcGCACGAGcCGGCGGCGcagaUGUACGu -3'
miRNA:   3'- -UGG--UGUGCUCuGCUGCCGC----ACAUGUc -5'
29567 5' -54.6 NC_006151.1 + 134228 0.68 0.867011
Target:  5'- cACCACcaACGGGAuCGuggacgcgggcuuucGCGGCGagGUGCAGg -3'
miRNA:   3'- -UGGUG--UGCUCU-GC---------------UGCCGCa-CAUGUC- -5'
29567 5' -54.6 NC_006151.1 + 133472 0.67 0.917538
Target:  5'- gGCC-CGCGAGGCGGCcgcgGGCGUcaccuugGCGGc -3'
miRNA:   3'- -UGGuGUGCUCUGCUG----CCGCAca-----UGUC- -5'
29567 5' -54.6 NC_006151.1 + 130874 0.73 0.598095
Target:  5'- gACCGCAguGGGCGGCGGCG-GUGgAGg -3'
miRNA:   3'- -UGGUGUgcUCUGCUGCCGCaCAUgUC- -5'
29567 5' -54.6 NC_006151.1 + 130675 0.67 0.911662
Target:  5'- uGCC-CGCGGGGCG-CGGCGcaggaUGUcCGGg -3'
miRNA:   3'- -UGGuGUGCUCUGCuGCCGC-----ACAuGUC- -5'
29567 5' -54.6 NC_006151.1 + 130642 0.69 0.832007
Target:  5'- cGCCGC-CGAGGCcgccuGCGGCGUGaACGu -3'
miRNA:   3'- -UGGUGuGCUCUGc----UGCCGCACaUGUc -5'
29567 5' -54.6 NC_006151.1 + 129441 0.67 0.923174
Target:  5'- cCCAaguggGCGGGGCGcACGGCcGUGgGCGGg -3'
miRNA:   3'- uGGUg----UGCUCUGC-UGCCG-CACaUGUC- -5'
29567 5' -54.6 NC_006151.1 + 128147 0.66 0.933721
Target:  5'- cGCCGUACGAGgccaggcugcgcGCGAUGGCGUaGUugAa -3'
miRNA:   3'- -UGGUGUGCUC------------UGCUGCCGCA-CAugUc -5'
29567 5' -54.6 NC_006151.1 + 128012 0.69 0.856296
Target:  5'- cGCgGgGCGGcGGCGACGGCGUcUGCGa -3'
miRNA:   3'- -UGgUgUGCU-CUGCUGCCGCAcAUGUc -5'
29567 5' -54.6 NC_006151.1 + 127132 0.66 0.947737
Target:  5'- gACCACgAUGAcACGcACGccGUGUGUACAGa -3'
miRNA:   3'- -UGGUG-UGCUcUGC-UGC--CGCACAUGUC- -5'
29567 5' -54.6 NC_006151.1 + 125526 0.7 0.769291
Target:  5'- gGCCAucuCGCGGuGcguggaggugcGCGGCGGCGUGUACGu -3'
miRNA:   3'- -UGGU---GUGCU-C-----------UGCUGCCGCACAUGUc -5'
29567 5' -54.6 NC_006151.1 + 124811 0.66 0.951526
Target:  5'- cGCCGCACuucacgguggccuGGGACugggcccccaaGACGcggcGCGUGUGCAGc -3'
miRNA:   3'- -UGGUGUG-------------CUCUG-----------CUGC----CGCACAUGUC- -5'
29567 5' -54.6 NC_006151.1 + 122932 0.67 0.928569
Target:  5'- gACgACGCGGacgccGACGGCGGCGcc-GCGGg -3'
miRNA:   3'- -UGgUGUGCU-----CUGCUGCCGCacaUGUC- -5'
29567 5' -54.6 NC_006151.1 + 122428 0.67 0.899193
Target:  5'- cGCCGC-CGAGGCccgggaggcggaGGCGGCGUccACGGc -3'
miRNA:   3'- -UGGUGuGCUCUG------------CUGCCGCAcaUGUC- -5'
29567 5' -54.6 NC_006151.1 + 121156 0.7 0.806066
Target:  5'- gGCCGCugGugcaGACGGCcGUGUACGc -3'
miRNA:   3'- -UGGUGugCucugCUGCCG-CACAUGUc -5'
29567 5' -54.6 NC_006151.1 + 120832 0.68 0.863991
Target:  5'- cGCCGCGCGAcgacACGugGGUGgccacGUACAc -3'
miRNA:   3'- -UGGUGUGCUc---UGCugCCGCa----CAUGUc -5'
29567 5' -54.6 NC_006151.1 + 118957 0.72 0.680234
Target:  5'- gUCGCugGAGGCGcucgucgccgcCGGCGUGUACGa -3'
miRNA:   3'- uGGUGugCUCUGCu----------GCCGCACAUGUc -5'
29567 5' -54.6 NC_006151.1 + 118576 0.67 0.911662
Target:  5'- --gGCACGAGGCGugGcGCGUGccGCu- -3'
miRNA:   3'- uggUGUGCUCUGCugC-CGCACa-UGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.