miRNA display CGI


Results 21 - 40 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29567 5' -54.6 NC_006151.1 + 116762 0.66 0.943304
Target:  5'- aGCC-CGCGAGAagaGCaGCGUGUGCu- -3'
miRNA:   3'- -UGGuGUGCUCUgc-UGcCGCACAUGuc -5'
29567 5' -54.6 NC_006151.1 + 113686 0.7 0.797089
Target:  5'- aACCGCuuCGAGG-GGC-GCGUGUGCGGg -3'
miRNA:   3'- -UGGUGu-GCUCUgCUGcCGCACAUGUC- -5'
29567 5' -54.6 NC_006151.1 + 113014 0.72 0.659768
Target:  5'- gACCACACG-GGCGACGacGCGUGcgcCGGg -3'
miRNA:   3'- -UGGUGUGCuCUGCUGC--CGCACau-GUC- -5'
29567 5' -54.6 NC_006151.1 + 112045 0.67 0.911662
Target:  5'- gGCCgGCGgGcGGGCGGCGGCGgugGUGguGg -3'
miRNA:   3'- -UGG-UGUgC-UCUGCUGCCGCa--CAUguC- -5'
29567 5' -54.6 NC_006151.1 + 111318 0.69 0.829484
Target:  5'- gGCCGCgugcccgggcacggGCGAGAUGACGGuCGg--GCGGa -3'
miRNA:   3'- -UGGUG--------------UGCUCUGCUGCC-GCacaUGUC- -5'
29567 5' -54.6 NC_006151.1 + 106755 0.69 0.856296
Target:  5'- cGCCGC-CGAGcagcGCGACGcGCGUGaGCGc -3'
miRNA:   3'- -UGGUGuGCUC----UGCUGC-CGCACaUGUc -5'
29567 5' -54.6 NC_006151.1 + 106191 0.67 0.911662
Target:  5'- cGCCGCugGAGcCGGCGGUGcg-GCu- -3'
miRNA:   3'- -UGGUGugCUCuGCUGCCGCacaUGuc -5'
29567 5' -54.6 NC_006151.1 + 105881 0.67 0.92804
Target:  5'- uACCGCGCGGucGGCGACaagcuGGCGgccaugcUGUGCAc -3'
miRNA:   3'- -UGGUGUGCU--CUGCUG-----CCGC-------ACAUGUc -5'
29567 5' -54.6 NC_006151.1 + 105712 0.72 0.680234
Target:  5'- gGCCGCGCGccuCGACGGCGccGUGCGc -3'
miRNA:   3'- -UGGUGUGCucuGCUGCCGCa-CAUGUc -5'
29567 5' -54.6 NC_006151.1 + 104890 0.66 0.943304
Target:  5'- uGCUGCGCGAGgugguggacGCGGCGGCG-GcGCGc -3'
miRNA:   3'- -UGGUGUGCUC---------UGCUGCCGCaCaUGUc -5'
29567 5' -54.6 NC_006151.1 + 104808 0.66 0.947737
Target:  5'- cGCCGCGaccuGGCGGCGGCGcGcgACGGc -3'
miRNA:   3'- -UGGUGUgcu-CUGCUGCCGCaCa-UGUC- -5'
29567 5' -54.6 NC_006151.1 + 104562 0.67 0.911662
Target:  5'- cGCCcuggGCGCGcGGCGcGCGGaCGUGcUGCAGg -3'
miRNA:   3'- -UGG----UGUGCuCUGC-UGCC-GCAC-AUGUC- -5'
29567 5' -54.6 NC_006151.1 + 103806 0.67 0.917538
Target:  5'- gGCCGCGCu-GuCGGCGGCcGUGgcgGCGGc -3'
miRNA:   3'- -UGGUGUGcuCuGCUGCCG-CACa--UGUC- -5'
29567 5' -54.6 NC_006151.1 + 103627 0.73 0.628921
Target:  5'- cGCCgACGCGGuGGCGGCGGCGcugGCGGa -3'
miRNA:   3'- -UGG-UGUGCU-CUGCUGCCGCacaUGUC- -5'
29567 5' -54.6 NC_006151.1 + 102509 0.72 0.680234
Target:  5'- cGCgGCGCGGGAcccCGGCGGCGUcUACGa -3'
miRNA:   3'- -UGgUGUGCUCU---GCUGCCGCAcAUGUc -5'
29567 5' -54.6 NC_006151.1 + 101476 0.7 0.787962
Target:  5'- uACCGC-CGcGGCGACGuCGUGUACGu -3'
miRNA:   3'- -UGGUGuGCuCUGCUGCcGCACAUGUc -5'
29567 5' -54.6 NC_006151.1 + 100795 0.67 0.916962
Target:  5'- gACUcCACGAGguggcggGCGACGGCGag-GCGGg -3'
miRNA:   3'- -UGGuGUGCUC-------UGCUGCCGCacaUGUC- -5'
29567 5' -54.6 NC_006151.1 + 100466 0.66 0.947737
Target:  5'- cGCUGCGCGAGuGCGA-GGCGcUGggccUGCAGg -3'
miRNA:   3'- -UGGUGUGCUC-UGCUgCCGC-AC----AUGUC- -5'
29567 5' -54.6 NC_006151.1 + 100419 0.69 0.856296
Target:  5'- cGCCgACGCgGGGGCGcugcGCGGCGUGauggcGCAGa -3'
miRNA:   3'- -UGG-UGUG-CUCUGC----UGCCGCACa----UGUC- -5'
29567 5' -54.6 NC_006151.1 + 99579 0.67 0.899193
Target:  5'- uGCUGCGCGAGGUGGCGGCGgccGaGCGc -3'
miRNA:   3'- -UGGUGUGCUCUGCUGCCGCa--CaUGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.