miRNA display CGI


Results 21 - 40 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29567 5' -54.6 NC_006151.1 + 30279 0.72 0.700541
Target:  5'- aGCgGCGCGGGGgGAgGGUGUGUAUg- -3'
miRNA:   3'- -UGgUGUGCUCUgCUgCCGCACAUGuc -5'
29567 5' -54.6 NC_006151.1 + 30321 0.67 0.928569
Target:  5'- aACCACGaaagaugagGAGGCGGCGGCG-GcGCGa -3'
miRNA:   3'- -UGGUGUg--------CUCUGCUGCCGCaCaUGUc -5'
29567 5' -54.6 NC_006151.1 + 33220 0.69 0.848396
Target:  5'- -gCACGCGGGGCGcccCGGCGg--GCGGg -3'
miRNA:   3'- ugGUGUGCUCUGCu--GCCGCacaUGUC- -5'
29567 5' -54.6 NC_006151.1 + 33544 0.7 0.787962
Target:  5'- --gAC-CGAGGCGACGGCGgagACGGa -3'
miRNA:   3'- uggUGuGCUCUGCUGCCGCacaUGUC- -5'
29567 5' -54.6 NC_006151.1 + 42325 0.66 0.951935
Target:  5'- cCCGCGCGAagcuGCGACGGgaGUGgaGCGGa -3'
miRNA:   3'- uGGUGUGCUc---UGCUGCCg-CACa-UGUC- -5'
29567 5' -54.6 NC_006151.1 + 45191 0.68 0.885787
Target:  5'- cGCCAcCACGGacGGCGACGGgGUGcGCc- -3'
miRNA:   3'- -UGGU-GUGCU--CUGCUGCCgCACaUGuc -5'
29567 5' -54.6 NC_006151.1 + 51586 0.72 0.659768
Target:  5'- cUCGgGCGGGugGACGGCGggucaGUACAc -3'
miRNA:   3'- uGGUgUGCUCugCUGCCGCa----CAUGUc -5'
29567 5' -54.6 NC_006151.1 + 52595 0.67 0.917538
Target:  5'- cGCCcuGCGCGuGGACGAaGGCGUcGUcgcGCAGg -3'
miRNA:   3'- -UGG--UGUGC-UCUGCUgCCGCA-CA---UGUC- -5'
29567 5' -54.6 NC_006151.1 + 53394 0.73 0.649497
Target:  5'- aGCCACcaGCaGuAGACGACGGCcGUGaGCAGg -3'
miRNA:   3'- -UGGUG--UG-C-UCUGCUGCCG-CACaUGUC- -5'
29567 5' -54.6 NC_006151.1 + 53960 0.67 0.905546
Target:  5'- aACCACGCcagcGGCGGCGGCGccuccGCGGg -3'
miRNA:   3'- -UGGUGUGcu--CUGCUGCCGCaca--UGUC- -5'
29567 5' -54.6 NC_006151.1 + 54103 0.67 0.905546
Target:  5'- gGCCAUGuCGGcugcGACGGCGGCGgcUGCGGa -3'
miRNA:   3'- -UGGUGU-GCU----CUGCUGCCGCacAUGUC- -5'
29567 5' -54.6 NC_006151.1 + 55864 0.66 0.933721
Target:  5'- uACCugAcCGAGAUcGCGGCGcUGUcGCGGc -3'
miRNA:   3'- -UGGugU-GCUCUGcUGCCGC-ACA-UGUC- -5'
29567 5' -54.6 NC_006151.1 + 56662 0.7 0.778693
Target:  5'- uACCGCugGuGGACGACGGCGccGcGCGc -3'
miRNA:   3'- -UGGUGugC-UCUGCUGCCGCa-CaUGUc -5'
29567 5' -54.6 NC_006151.1 + 59280 0.66 0.951935
Target:  5'- cACCuugaACACGAG-CG-CGGCGUGgcgcccGCGGc -3'
miRNA:   3'- -UGG----UGUGCUCuGCuGCCGCACa-----UGUC- -5'
29567 5' -54.6 NC_006151.1 + 60735 0.67 0.927509
Target:  5'- uGCCggaGCACGAGGCaGCGGCGgcucgcgaagGCGGu -3'
miRNA:   3'- -UGG---UGUGCUCUGcUGCCGCaca-------UGUC- -5'
29567 5' -54.6 NC_006151.1 + 61255 0.68 0.871475
Target:  5'- cGCCACgaggACGcGGCGGCaGGCGguaucGUGCGGg -3'
miRNA:   3'- -UGGUG----UGCuCUGCUG-CCGCa----CAUGUC- -5'
29567 5' -54.6 NC_006151.1 + 62587 0.66 0.947737
Target:  5'- gGCgACgACGAguuuGACGACGGCGacgaggucgUGUACGa -3'
miRNA:   3'- -UGgUG-UGCU----CUGCUGCCGC---------ACAUGUc -5'
29567 5' -54.6 NC_006151.1 + 64627 0.66 0.943304
Target:  5'- cGCCGgcCGCGGGGCG-CGGCGccccGcGCAGg -3'
miRNA:   3'- -UGGU--GUGCUCUGCuGCCGCa---CaUGUC- -5'
29567 5' -54.6 NC_006151.1 + 66774 0.78 0.364248
Target:  5'- gGCCGCccuCGGGACGGCGGCGgcgGCGGc -3'
miRNA:   3'- -UGGUGu--GCUCUGCUGCCGCacaUGUC- -5'
29567 5' -54.6 NC_006151.1 + 66921 0.66 0.938633
Target:  5'- gGCCACGaugGAGGCGGgGGCGaggGCAa -3'
miRNA:   3'- -UGGUGUg--CUCUGCUgCCGCacaUGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.