miRNA display CGI


Results 41 - 60 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29567 5' -54.6 NC_006151.1 + 69971 0.67 0.904921
Target:  5'- gGCCGCGCGGGcgcugcaGCGGCGGCaGcGU-CAGc -3'
miRNA:   3'- -UGGUGUGCUC-------UGCUGCCG-CaCAuGUC- -5'
29567 5' -54.6 NC_006151.1 + 70934 0.67 0.928569
Target:  5'- cGCUGCACGAcGGCGccuucuCGGCG-GUGCGc -3'
miRNA:   3'- -UGGUGUGCU-CUGCu-----GCCGCaCAUGUc -5'
29567 5' -54.6 NC_006151.1 + 72257 0.67 0.911662
Target:  5'- gGCCGC-CGAcGcCGAgCGGCGUGgcCAGc -3'
miRNA:   3'- -UGGUGuGCU-CuGCU-GCCGCACauGUC- -5'
29567 5' -54.6 NC_006151.1 + 72561 0.71 0.740381
Target:  5'- gGCCGCGCGGGAgggUGGgGGCGgGUgACAGa -3'
miRNA:   3'- -UGGUGUGCUCU---GCUgCCGCaCA-UGUC- -5'
29567 5' -54.6 NC_006151.1 + 74253 0.68 0.871475
Target:  5'- uGCCGCGCGAGaagGCGggcaccACGGCGUaGUAgUAGa -3'
miRNA:   3'- -UGGUGUGCUC---UGC------UGCCGCA-CAU-GUC- -5'
29567 5' -54.6 NC_006151.1 + 75390 0.69 0.823534
Target:  5'- cACgGCGCGGGGCGGguGCGUGcGCGGg -3'
miRNA:   3'- -UGgUGUGCUCUGCUgcCGCACaUGUC- -5'
29567 5' -54.6 NC_006151.1 + 78451 0.71 0.749155
Target:  5'- uGCUGCGCGAGGCGAccgucuuCGGCGaggUGaUGCGGa -3'
miRNA:   3'- -UGGUGUGCUCUGCU-------GCCGC---AC-AUGUC- -5'
29567 5' -54.6 NC_006151.1 + 81943 0.66 0.943304
Target:  5'- gGCCACGcCGAGGCGcaccgccgcGCGGUaaaaGUaGUACGGc -3'
miRNA:   3'- -UGGUGU-GCUCUGC---------UGCCG----CA-CAUGUC- -5'
29567 5' -54.6 NC_006151.1 + 82460 0.67 0.911662
Target:  5'- uACCACGCgGAGACGgGCGGgGgcaccaccugGUACGa -3'
miRNA:   3'- -UGGUGUG-CUCUGC-UGCCgCa---------CAUGUc -5'
29567 5' -54.6 NC_006151.1 + 83577 0.69 0.823534
Target:  5'- gACCGCgggcccgaagaGCGGGACcaGGC-GCGUGUGCAGc -3'
miRNA:   3'- -UGGUG-----------UGCUCUG--CUGcCGCACAUGUC- -5'
29567 5' -54.6 NC_006151.1 + 86733 0.73 0.639212
Target:  5'- cGCCGcCGCGAGGC--CGGCGUGcGCGGa -3'
miRNA:   3'- -UGGU-GUGCUCUGcuGCCGCACaUGUC- -5'
29567 5' -54.6 NC_006151.1 + 89114 0.66 0.951935
Target:  5'- cCUGCGCGAGACcgagGGCGGCGggacCGGg -3'
miRNA:   3'- uGGUGUGCUCUG----CUGCCGCacauGUC- -5'
29567 5' -54.6 NC_006151.1 + 89389 0.74 0.547314
Target:  5'- -aCGCGCGAG-CGugGGCGUGaauCAGg -3'
miRNA:   3'- ugGUGUGCUCuGCugCCGCACau-GUC- -5'
29567 5' -54.6 NC_006151.1 + 89617 0.68 0.878742
Target:  5'- gGCCGCGa-GGAUGAgGaGCGUGUGCGc -3'
miRNA:   3'- -UGGUGUgcUCUGCUgC-CGCACAUGUc -5'
29567 5' -54.6 NC_006151.1 + 89653 0.68 0.863991
Target:  5'- gGCCAC-CGAGAgGugGcGCGUGcuCGGg -3'
miRNA:   3'- -UGGUGuGCUCUgCugC-CGCACauGUC- -5'
29567 5' -54.6 NC_006151.1 + 89837 0.67 0.928569
Target:  5'- uGCUGCcgGCGuAGGCGugGGUGUGcgggACGGu -3'
miRNA:   3'- -UGGUG--UGC-UCUGCugCCGCACa---UGUC- -5'
29567 5' -54.6 NC_006151.1 + 90262 0.67 0.923174
Target:  5'- cCCGCgGCGaAGACGGCGGCGccgACGa -3'
miRNA:   3'- uGGUG-UGC-UCUGCUGCCGCacaUGUc -5'
29567 5' -54.6 NC_006151.1 + 90632 0.72 0.700541
Target:  5'- gGCC-CGCGGGcgcuugGCGAUgGGCGUGUACAu -3'
miRNA:   3'- -UGGuGUGCUC------UGCUG-CCGCACAUGUc -5'
29567 5' -54.6 NC_006151.1 + 90716 0.66 0.933721
Target:  5'- cGCCcCGC-AGGCGGCGGCGacgGUgGCGGc -3'
miRNA:   3'- -UGGuGUGcUCUGCUGCCGCa--CA-UGUC- -5'
29567 5' -54.6 NC_006151.1 + 91558 0.69 0.848396
Target:  5'- gGCCA-GCGGGGCGAUGGCGgcgcgcgcGUGCu- -3'
miRNA:   3'- -UGGUgUGCUCUGCUGCCGCa-------CAUGuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.