Results 41 - 60 of 109 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29567 | 5' | -54.6 | NC_006151.1 | + | 75390 | 0.69 | 0.823534 |
Target: 5'- cACgGCGCGGGGCGGguGCGUGcGCGGg -3' miRNA: 3'- -UGgUGUGCUCUGCUgcCGCACaUGUC- -5' |
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29567 | 5' | -54.6 | NC_006151.1 | + | 111318 | 0.69 | 0.829484 |
Target: 5'- gGCCGCgugcccgggcacggGCGAGAUGACGGuCGg--GCGGa -3' miRNA: 3'- -UGGUG--------------UGCUCUGCUGCC-GCacaUGUC- -5' |
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29567 | 5' | -54.6 | NC_006151.1 | + | 130642 | 0.69 | 0.832007 |
Target: 5'- cGCCGC-CGAGGCcgccuGCGGCGUGaACGu -3' miRNA: 3'- -UGGUGuGCUCUGc----UGCCGCACaUGUc -5' |
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29567 | 5' | -54.6 | NC_006151.1 | + | 96742 | 0.69 | 0.832007 |
Target: 5'- --gGCGCGAcGACGgaggccaugGCGGCGUGUGCu- -3' miRNA: 3'- uggUGUGCU-CUGC---------UGCCGCACAUGuc -5' |
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29567 | 5' | -54.6 | NC_006151.1 | + | 21395 | 0.69 | 0.840297 |
Target: 5'- gGCCG-GCGGGGCGAaggGGCG-GUGCGGc -3' miRNA: 3'- -UGGUgUGCUCUGCUg--CCGCaCAUGUC- -5' |
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29567 | 5' | -54.6 | NC_006151.1 | + | 33220 | 0.69 | 0.848396 |
Target: 5'- -gCACGCGGGGCGcccCGGCGg--GCGGg -3' miRNA: 3'- ugGUGUGCUCUGCu--GCCGCacaUGUC- -5' |
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29567 | 5' | -54.6 | NC_006151.1 | + | 91558 | 0.69 | 0.848396 |
Target: 5'- gGCCA-GCGGGGCGAUGGCGgcgcgcgcGUGCu- -3' miRNA: 3'- -UGGUgUGCUCUGCUGCCGCa-------CAUGuc -5' |
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29567 | 5' | -54.6 | NC_006151.1 | + | 128012 | 0.69 | 0.856296 |
Target: 5'- cGCgGgGCGGcGGCGACGGCGUcUGCGa -3' miRNA: 3'- -UGgUgUGCU-CUGCUGCCGCAcAUGUc -5' |
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29567 | 5' | -54.6 | NC_006151.1 | + | 100419 | 0.69 | 0.856296 |
Target: 5'- cGCCgACGCgGGGGCGcugcGCGGCGUGauggcGCAGa -3' miRNA: 3'- -UGG-UGUG-CUCUGC----UGCCGCACa----UGUC- -5' |
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29567 | 5' | -54.6 | NC_006151.1 | + | 106755 | 0.69 | 0.856296 |
Target: 5'- cGCCGC-CGAGcagcGCGACGcGCGUGaGCGc -3' miRNA: 3'- -UGGUGuGCUC----UGCUGC-CGCACaUGUc -5' |
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29567 | 5' | -54.6 | NC_006151.1 | + | 11686 | 0.68 | 0.863991 |
Target: 5'- cGCCcgACGGGGCcgcggGACGGCGcGUGCGGc -3' miRNA: 3'- -UGGugUGCUCUG-----CUGCCGCaCAUGUC- -5' |
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29567 | 5' | -54.6 | NC_006151.1 | + | 89653 | 0.68 | 0.863991 |
Target: 5'- gGCCAC-CGAGAgGugGcGCGUGcuCGGg -3' miRNA: 3'- -UGGUGuGCUCUgCugC-CGCACauGUC- -5' |
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29567 | 5' | -54.6 | NC_006151.1 | + | 120832 | 0.68 | 0.863991 |
Target: 5'- cGCCGCGCGAcgacACGugGGUGgccacGUACAc -3' miRNA: 3'- -UGGUGUGCUc---UGCugCCGCa----CAUGUc -5' |
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29567 | 5' | -54.6 | NC_006151.1 | + | 134228 | 0.68 | 0.867011 |
Target: 5'- cACCACcaACGGGAuCGuggacgcgggcuuucGCGGCGagGUGCAGg -3' miRNA: 3'- -UGGUG--UGCUCU-GC---------------UGCCGCa-CAUGUC- -5' |
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29567 | 5' | -54.6 | NC_006151.1 | + | 29433 | 0.68 | 0.871475 |
Target: 5'- gGCCGCGgGGGGCGGCGGgGagagGggacGCGGa -3' miRNA: 3'- -UGGUGUgCUCUGCUGCCgCa---Ca---UGUC- -5' |
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29567 | 5' | -54.6 | NC_006151.1 | + | 23551 | 0.68 | 0.871475 |
Target: 5'- cGCCAaagACGAGcACGAcgauguacaggcCGGCGUcGUACAGc -3' miRNA: 3'- -UGGUg--UGCUC-UGCU------------GCCGCA-CAUGUC- -5' |
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29567 | 5' | -54.6 | NC_006151.1 | + | 61255 | 0.68 | 0.871475 |
Target: 5'- cGCCACgaggACGcGGCGGCaGGCGguaucGUGCGGg -3' miRNA: 3'- -UGGUG----UGCuCUGCUG-CCGCa----CAUGUC- -5' |
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29567 | 5' | -54.6 | NC_006151.1 | + | 74253 | 0.68 | 0.871475 |
Target: 5'- uGCCGCGCGAGaagGCGggcaccACGGCGUaGUAgUAGa -3' miRNA: 3'- -UGGUGUGCUC---UGC------UGCCGCA-CAU-GUC- -5' |
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29567 | 5' | -54.6 | NC_006151.1 | + | 89617 | 0.68 | 0.878742 |
Target: 5'- gGCCGCGa-GGAUGAgGaGCGUGUGCGc -3' miRNA: 3'- -UGGUGUgcUCUGCUgC-CGCACAUGUc -5' |
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29567 | 5' | -54.6 | NC_006151.1 | + | 3239 | 0.68 | 0.885787 |
Target: 5'- uCCAgGCGGcGCGGCGGCG-GaGCGGg -3' miRNA: 3'- uGGUgUGCUcUGCUGCCGCaCaUGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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