Results 41 - 60 of 109 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29567 | 5' | -54.6 | NC_006151.1 | + | 60735 | 0.67 | 0.927509 |
Target: 5'- uGCCggaGCACGAGGCaGCGGCGgcucgcgaagGCGGu -3' miRNA: 3'- -UGG---UGUGCUCUGcUGCCGCaca-------UGUC- -5' |
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29567 | 5' | -54.6 | NC_006151.1 | + | 129441 | 0.67 | 0.923174 |
Target: 5'- cCCAaguggGCGGGGCGcACGGCcGUGgGCGGg -3' miRNA: 3'- uGGUg----UGCUCUGC-UGCCG-CACaUGUC- -5' |
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29567 | 5' | -54.6 | NC_006151.1 | + | 90262 | 0.67 | 0.923174 |
Target: 5'- cCCGCgGCGaAGACGGCGGCGccgACGa -3' miRNA: 3'- uGGUG-UGC-UCUGCUGCCGCacaUGUc -5' |
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29567 | 5' | -54.6 | NC_006151.1 | + | 133472 | 0.67 | 0.917538 |
Target: 5'- gGCC-CGCGAGGCGGCcgcgGGCGUcaccuugGCGGc -3' miRNA: 3'- -UGGuGUGCUCUGCUG----CCGCAca-----UGUC- -5' |
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29567 | 5' | -54.6 | NC_006151.1 | + | 103806 | 0.67 | 0.917538 |
Target: 5'- gGCCGCGCu-GuCGGCGGCcGUGgcgGCGGc -3' miRNA: 3'- -UGGUGUGcuCuGCUGCCG-CACa--UGUC- -5' |
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29567 | 5' | -54.6 | NC_006151.1 | + | 52595 | 0.67 | 0.917538 |
Target: 5'- cGCCcuGCGCGuGGACGAaGGCGUcGUcgcGCAGg -3' miRNA: 3'- -UGG--UGUGC-UCUGCUgCCGCA-CA---UGUC- -5' |
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29567 | 5' | -54.6 | NC_006151.1 | + | 21317 | 0.67 | 0.917538 |
Target: 5'- gUgGCGCGAGACGcccggcGCGGCGgggGUccGCGGc -3' miRNA: 3'- uGgUGUGCUCUGC------UGCCGCa--CA--UGUC- -5' |
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29567 | 5' | -54.6 | NC_006151.1 | + | 29433 | 0.68 | 0.871475 |
Target: 5'- gGCCGCGgGGGGCGGCGGgGagagGggacGCGGa -3' miRNA: 3'- -UGGUGUgCUCUGCUGCCgCa---Ca---UGUC- -5' |
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29567 | 5' | -54.6 | NC_006151.1 | + | 134228 | 0.68 | 0.867011 |
Target: 5'- cACCACcaACGGGAuCGuggacgcgggcuuucGCGGCGagGUGCAGg -3' miRNA: 3'- -UGGUG--UGCUCU-GC---------------UGCCGCa-CAUGUC- -5' |
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29567 | 5' | -54.6 | NC_006151.1 | + | 120832 | 0.68 | 0.863991 |
Target: 5'- cGCCGCGCGAcgacACGugGGUGgccacGUACAc -3' miRNA: 3'- -UGGUGUGCUc---UGCugCCGCa----CAUGUc -5' |
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29567 | 5' | -54.6 | NC_006151.1 | + | 89653 | 0.68 | 0.863991 |
Target: 5'- gGCCAC-CGAGAgGugGcGCGUGcuCGGg -3' miRNA: 3'- -UGGUGuGCUCUgCugC-CGCACauGUC- -5' |
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29567 | 5' | -54.6 | NC_006151.1 | + | 11686 | 0.68 | 0.863991 |
Target: 5'- cGCCcgACGGGGCcgcggGACGGCGcGUGCGGc -3' miRNA: 3'- -UGGugUGCUCUG-----CUGCCGCaCAUGUC- -5' |
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29567 | 5' | -54.6 | NC_006151.1 | + | 74253 | 0.68 | 0.871475 |
Target: 5'- uGCCGCGCGAGaagGCGggcaccACGGCGUaGUAgUAGa -3' miRNA: 3'- -UGGUGUGCUC---UGC------UGCCGCA-CAU-GUC- -5' |
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29567 | 5' | -54.6 | NC_006151.1 | + | 23551 | 0.68 | 0.871475 |
Target: 5'- cGCCAaagACGAGcACGAcgauguacaggcCGGCGUcGUACAGc -3' miRNA: 3'- -UGGUg--UGCUC-UGCU------------GCCGCA-CAUGUC- -5' |
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29567 | 5' | -54.6 | NC_006151.1 | + | 61255 | 0.68 | 0.871475 |
Target: 5'- cGCCACgaggACGcGGCGGCaGGCGguaucGUGCGGg -3' miRNA: 3'- -UGGUG----UGCuCUGCUG-CCGCa----CAUGUC- -5' |
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29567 | 5' | -54.6 | NC_006151.1 | + | 89617 | 0.68 | 0.878742 |
Target: 5'- gGCCGCGa-GGAUGAgGaGCGUGUGCGc -3' miRNA: 3'- -UGGUGUgcUCUGCUgC-CGCACAUGUc -5' |
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29567 | 5' | -54.6 | NC_006151.1 | + | 3239 | 0.68 | 0.885787 |
Target: 5'- uCCAgGCGGcGCGGCGGCG-GaGCGGg -3' miRNA: 3'- uGGUgUGCUcUGCUGCCGCaCaUGUC- -5' |
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29567 | 5' | -54.6 | NC_006151.1 | + | 45191 | 0.68 | 0.885787 |
Target: 5'- cGCCAcCACGGacGGCGACGGgGUGcGCc- -3' miRNA: 3'- -UGGU-GUGCU--CUGCUGCCgCACaUGuc -5' |
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29567 | 5' | -54.6 | NC_006151.1 | + | 10200 | 0.68 | 0.892606 |
Target: 5'- cGCgGCGCG-GGCGGCGGC---UGCAGa -3' miRNA: 3'- -UGgUGUGCuCUGCUGCCGcacAUGUC- -5' |
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29567 | 5' | -54.6 | NC_006151.1 | + | 106755 | 0.69 | 0.856296 |
Target: 5'- cGCCGC-CGAGcagcGCGACGcGCGUGaGCGc -3' miRNA: 3'- -UGGUGuGCUC----UGCUGC-CGCACaUGUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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