Results 41 - 60 of 109 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29567 | 5' | -54.6 | NC_006151.1 | + | 127132 | 0.66 | 0.947737 |
Target: 5'- gACCACgAUGAcACGcACGccGUGUGUACAGa -3' miRNA: 3'- -UGGUG-UGCUcUGC-UGC--CGCACAUGUC- -5' |
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29567 | 5' | -54.6 | NC_006151.1 | + | 62587 | 0.66 | 0.947737 |
Target: 5'- gGCgACgACGAguuuGACGACGGCGacgaggucgUGUACGa -3' miRNA: 3'- -UGgUG-UGCU----CUGCUGCCGC---------ACAUGUc -5' |
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29567 | 5' | -54.6 | NC_006151.1 | + | 124811 | 0.66 | 0.951526 |
Target: 5'- cGCCGCACuucacgguggccuGGGACugggcccccaaGACGcggcGCGUGUGCAGc -3' miRNA: 3'- -UGGUGUG-------------CUCUG-----------CUGC----CGCACAUGUC- -5' |
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29567 | 5' | -54.6 | NC_006151.1 | + | 89114 | 0.66 | 0.951935 |
Target: 5'- cCUGCGCGAGACcgagGGCGGCGggacCGGg -3' miRNA: 3'- uGGUGUGCUCUG----CUGCCGCacauGUC- -5' |
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29567 | 5' | -54.6 | NC_006151.1 | + | 42325 | 0.66 | 0.951935 |
Target: 5'- cCCGCGCGAagcuGCGACGGgaGUGgaGCGGa -3' miRNA: 3'- uGGUGUGCUc---UGCUGCCg-CACa-UGUC- -5' |
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29567 | 5' | -54.6 | NC_006151.1 | + | 66921 | 0.66 | 0.938633 |
Target: 5'- gGCCACGaugGAGGCGGgGGCGaggGCAa -3' miRNA: 3'- -UGGUGUg--CUCUGCUgCCGCacaUGUc -5' |
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29567 | 5' | -54.6 | NC_006151.1 | + | 18981 | 0.66 | 0.938633 |
Target: 5'- gGCUGCACGAGGCGuacgcGCGGCGcGccacCAGc -3' miRNA: 3'- -UGGUGUGCUCUGC-----UGCCGCaCau--GUC- -5' |
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29567 | 5' | -54.6 | NC_006151.1 | + | 133472 | 0.67 | 0.917538 |
Target: 5'- gGCC-CGCGAGGCGGCcgcgGGCGUcaccuugGCGGc -3' miRNA: 3'- -UGGuGUGCUCUGCUG----CCGCAca-----UGUC- -5' |
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29567 | 5' | -54.6 | NC_006151.1 | + | 90262 | 0.67 | 0.923174 |
Target: 5'- cCCGCgGCGaAGACGGCGGCGccgACGa -3' miRNA: 3'- uGGUG-UGC-UCUGCUGCCGCacaUGUc -5' |
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29567 | 5' | -54.6 | NC_006151.1 | + | 129441 | 0.67 | 0.923174 |
Target: 5'- cCCAaguggGCGGGGCGcACGGCcGUGgGCGGg -3' miRNA: 3'- uGGUg----UGCUCUGC-UGCCG-CACaUGUC- -5' |
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29567 | 5' | -54.6 | NC_006151.1 | + | 60735 | 0.67 | 0.927509 |
Target: 5'- uGCCggaGCACGAGGCaGCGGCGgcucgcgaagGCGGu -3' miRNA: 3'- -UGG---UGUGCUCUGcUGCCGCaca-------UGUC- -5' |
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29567 | 5' | -54.6 | NC_006151.1 | + | 105881 | 0.67 | 0.92804 |
Target: 5'- uACCGCGCGGucGGCGACaagcuGGCGgccaugcUGUGCAc -3' miRNA: 3'- -UGGUGUGCU--CUGCUG-----CCGC-------ACAUGUc -5' |
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29567 | 5' | -54.6 | NC_006151.1 | + | 30321 | 0.67 | 0.928569 |
Target: 5'- aACCACGaaagaugagGAGGCGGCGGCG-GcGCGa -3' miRNA: 3'- -UGGUGUg--------CUCUGCUGCCGCaCaUGUc -5' |
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29567 | 5' | -54.6 | NC_006151.1 | + | 70934 | 0.67 | 0.928569 |
Target: 5'- cGCUGCACGAcGGCGccuucuCGGCG-GUGCGc -3' miRNA: 3'- -UGGUGUGCU-CUGCu-----GCCGCaCAUGUc -5' |
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29567 | 5' | -54.6 | NC_006151.1 | + | 89837 | 0.67 | 0.928569 |
Target: 5'- uGCUGCcgGCGuAGGCGugGGUGUGcgggACGGu -3' miRNA: 3'- -UGGUG--UGC-UCUGCugCCGCACa---UGUC- -5' |
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29567 | 5' | -54.6 | NC_006151.1 | + | 122932 | 0.67 | 0.928569 |
Target: 5'- gACgACGCGGacgccGACGGCGGCGcc-GCGGg -3' miRNA: 3'- -UGgUGUGCU-----CUGCUGCCGCacaUGUC- -5' |
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29567 | 5' | -54.6 | NC_006151.1 | + | 55864 | 0.66 | 0.933721 |
Target: 5'- uACCugAcCGAGAUcGCGGCGcUGUcGCGGc -3' miRNA: 3'- -UGGugU-GCUCUGcUGCCGC-ACA-UGUC- -5' |
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29567 | 5' | -54.6 | NC_006151.1 | + | 5442 | 0.66 | 0.933721 |
Target: 5'- gGCCGCggGCGAcggucucgacGGCGACGGUGgugGUGgAGu -3' miRNA: 3'- -UGGUG--UGCU----------CUGCUGCCGCa--CAUgUC- -5' |
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29567 | 5' | -54.6 | NC_006151.1 | + | 90716 | 0.66 | 0.933721 |
Target: 5'- cGCCcCGC-AGGCGGCGGCGacgGUgGCGGc -3' miRNA: 3'- -UGGuGUGcUCUGCUGCCGCa--CA-UGUC- -5' |
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29567 | 5' | -54.6 | NC_006151.1 | + | 128147 | 0.66 | 0.933721 |
Target: 5'- cGCCGUACGAGgccaggcugcgcGCGAUGGCGUaGUugAa -3' miRNA: 3'- -UGGUGUGCUC------------UGCUGCCGCA-CAugUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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