miRNA display CGI


Results 41 - 60 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29567 5' -54.6 NC_006151.1 + 104562 0.67 0.911662
Target:  5'- cGCCcuggGCGCGcGGCGcGCGGaCGUGcUGCAGg -3'
miRNA:   3'- -UGG----UGUGCuCUGC-UGCC-GCAC-AUGUC- -5'
29567 5' -54.6 NC_006151.1 + 54103 0.67 0.905546
Target:  5'- gGCCAUGuCGGcugcGACGGCGGCGgcUGCGGa -3'
miRNA:   3'- -UGGUGU-GCU----CUGCUGCCGCacAUGUC- -5'
29567 5' -54.6 NC_006151.1 + 2292 0.67 0.905546
Target:  5'- cGCC-CGCGGcGGCGACGGCGcccgggGU-CAGc -3'
miRNA:   3'- -UGGuGUGCU-CUGCUGCCGCa-----CAuGUC- -5'
29567 5' -54.6 NC_006151.1 + 53960 0.67 0.905546
Target:  5'- aACCACGCcagcGGCGGCGGCGccuccGCGGg -3'
miRNA:   3'- -UGGUGUGcu--CUGCUGCCGCaca--UGUC- -5'
29567 5' -54.6 NC_006151.1 + 69971 0.67 0.904921
Target:  5'- gGCCGCGCGGGcgcugcaGCGGCGGCaGcGU-CAGc -3'
miRNA:   3'- -UGGUGUGCUC-------UGCUGCCG-CaCAuGUC- -5'
29567 5' -54.6 NC_006151.1 + 99579 0.67 0.899193
Target:  5'- uGCUGCGCGAGGUGGCGGCGgccGaGCGc -3'
miRNA:   3'- -UGGUGUGCUCUGCUGCCGCa--CaUGUc -5'
29567 5' -54.6 NC_006151.1 + 122428 0.67 0.899193
Target:  5'- cGCCGC-CGAGGCccgggaggcggaGGCGGCGUccACGGc -3'
miRNA:   3'- -UGGUGuGCUCUG------------CUGCCGCAcaUGUC- -5'
29567 5' -54.6 NC_006151.1 + 10200 0.68 0.892606
Target:  5'- cGCgGCGCG-GGCGGCGGC---UGCAGa -3'
miRNA:   3'- -UGgUGUGCuCUGCUGCCGcacAUGUC- -5'
29567 5' -54.6 NC_006151.1 + 45191 0.68 0.885787
Target:  5'- cGCCAcCACGGacGGCGACGGgGUGcGCc- -3'
miRNA:   3'- -UGGU-GUGCU--CUGCUGCCgCACaUGuc -5'
29567 5' -54.6 NC_006151.1 + 3239 0.68 0.885787
Target:  5'- uCCAgGCGGcGCGGCGGCG-GaGCGGg -3'
miRNA:   3'- uGGUgUGCUcUGCUGCCGCaCaUGUC- -5'
29567 5' -54.6 NC_006151.1 + 89617 0.68 0.878742
Target:  5'- gGCCGCGa-GGAUGAgGaGCGUGUGCGc -3'
miRNA:   3'- -UGGUGUgcUCUGCUgC-CGCACAUGUc -5'
29567 5' -54.6 NC_006151.1 + 29433 0.68 0.871475
Target:  5'- gGCCGCGgGGGGCGGCGGgGagagGggacGCGGa -3'
miRNA:   3'- -UGGUGUgCUCUGCUGCCgCa---Ca---UGUC- -5'
29567 5' -54.6 NC_006151.1 + 74253 0.68 0.871475
Target:  5'- uGCCGCGCGAGaagGCGggcaccACGGCGUaGUAgUAGa -3'
miRNA:   3'- -UGGUGUGCUC---UGC------UGCCGCA-CAU-GUC- -5'
29567 5' -54.6 NC_006151.1 + 23551 0.68 0.871475
Target:  5'- cGCCAaagACGAGcACGAcgauguacaggcCGGCGUcGUACAGc -3'
miRNA:   3'- -UGGUg--UGCUC-UGCU------------GCCGCA-CAUGUC- -5'
29567 5' -54.6 NC_006151.1 + 61255 0.68 0.871475
Target:  5'- cGCCACgaggACGcGGCGGCaGGCGguaucGUGCGGg -3'
miRNA:   3'- -UGGUG----UGCuCUGCUG-CCGCa----CAUGUC- -5'
29567 5' -54.6 NC_006151.1 + 134228 0.68 0.867011
Target:  5'- cACCACcaACGGGAuCGuggacgcgggcuuucGCGGCGagGUGCAGg -3'
miRNA:   3'- -UGGUG--UGCUCU-GC---------------UGCCGCa-CAUGUC- -5'
29567 5' -54.6 NC_006151.1 + 120832 0.68 0.863991
Target:  5'- cGCCGCGCGAcgacACGugGGUGgccacGUACAc -3'
miRNA:   3'- -UGGUGUGCUc---UGCugCCGCa----CAUGUc -5'
29567 5' -54.6 NC_006151.1 + 89653 0.68 0.863991
Target:  5'- gGCCAC-CGAGAgGugGcGCGUGcuCGGg -3'
miRNA:   3'- -UGGUGuGCUCUgCugC-CGCACauGUC- -5'
29567 5' -54.6 NC_006151.1 + 11686 0.68 0.863991
Target:  5'- cGCCcgACGGGGCcgcggGACGGCGcGUGCGGc -3'
miRNA:   3'- -UGGugUGCUCUG-----CUGCCGCaCAUGUC- -5'
29567 5' -54.6 NC_006151.1 + 106755 0.69 0.856296
Target:  5'- cGCCGC-CGAGcagcGCGACGcGCGUGaGCGc -3'
miRNA:   3'- -UGGUGuGCUC----UGCUGC-CGCACaUGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.