miRNA display CGI


Results 21 - 40 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29567 5' -54.6 NC_006151.1 + 30321 0.67 0.928569
Target:  5'- aACCACGaaagaugagGAGGCGGCGGCG-GcGCGa -3'
miRNA:   3'- -UGGUGUg--------CUCUGCUGCCGCaCaUGUc -5'
29567 5' -54.6 NC_006151.1 + 70934 0.67 0.928569
Target:  5'- cGCUGCACGAcGGCGccuucuCGGCG-GUGCGc -3'
miRNA:   3'- -UGGUGUGCU-CUGCu-----GCCGCaCAUGUc -5'
29567 5' -54.6 NC_006151.1 + 89837 0.67 0.928569
Target:  5'- uGCUGCcgGCGuAGGCGugGGUGUGcgggACGGu -3'
miRNA:   3'- -UGGUG--UGC-UCUGCugCCGCACa---UGUC- -5'
29567 5' -54.6 NC_006151.1 + 122932 0.67 0.928569
Target:  5'- gACgACGCGGacgccGACGGCGGCGcc-GCGGg -3'
miRNA:   3'- -UGgUGUGCU-----CUGCUGCCGCacaUGUC- -5'
29567 5' -54.6 NC_006151.1 + 105881 0.67 0.92804
Target:  5'- uACCGCGCGGucGGCGACaagcuGGCGgccaugcUGUGCAc -3'
miRNA:   3'- -UGGUGUGCU--CUGCUG-----CCGC-------ACAUGUc -5'
29567 5' -54.6 NC_006151.1 + 60735 0.67 0.927509
Target:  5'- uGCCggaGCACGAGGCaGCGGCGgcucgcgaagGCGGu -3'
miRNA:   3'- -UGG---UGUGCUCUGcUGCCGCaca-------UGUC- -5'
29567 5' -54.6 NC_006151.1 + 129441 0.67 0.923174
Target:  5'- cCCAaguggGCGGGGCGcACGGCcGUGgGCGGg -3'
miRNA:   3'- uGGUg----UGCUCUGC-UGCCG-CACaUGUC- -5'
29567 5' -54.6 NC_006151.1 + 90262 0.67 0.923174
Target:  5'- cCCGCgGCGaAGACGGCGGCGccgACGa -3'
miRNA:   3'- uGGUG-UGC-UCUGCUGCCGCacaUGUc -5'
29567 5' -54.6 NC_006151.1 + 21317 0.67 0.917538
Target:  5'- gUgGCGCGAGACGcccggcGCGGCGgggGUccGCGGc -3'
miRNA:   3'- uGgUGUGCUCUGC------UGCCGCa--CA--UGUC- -5'
29567 5' -54.6 NC_006151.1 + 52595 0.67 0.917538
Target:  5'- cGCCcuGCGCGuGGACGAaGGCGUcGUcgcGCAGg -3'
miRNA:   3'- -UGG--UGUGC-UCUGCUgCCGCA-CA---UGUC- -5'
29567 5' -54.6 NC_006151.1 + 103806 0.67 0.917538
Target:  5'- gGCCGCGCu-GuCGGCGGCcGUGgcgGCGGc -3'
miRNA:   3'- -UGGUGUGcuCuGCUGCCG-CACa--UGUC- -5'
29567 5' -54.6 NC_006151.1 + 133472 0.67 0.917538
Target:  5'- gGCC-CGCGAGGCGGCcgcgGGCGUcaccuugGCGGc -3'
miRNA:   3'- -UGGuGUGCUCUGCUG----CCGCAca-----UGUC- -5'
29567 5' -54.6 NC_006151.1 + 100795 0.67 0.916962
Target:  5'- gACUcCACGAGguggcggGCGACGGCGag-GCGGg -3'
miRNA:   3'- -UGGuGUGCUC-------UGCUGCCGCacaUGUC- -5'
29567 5' -54.6 NC_006151.1 + 3132 0.67 0.911662
Target:  5'- gGCCggGCGCGGGGCGcccuCGGCGggcucgGcGCAGa -3'
miRNA:   3'- -UGG--UGUGCUCUGCu---GCCGCa-----CaUGUC- -5'
29567 5' -54.6 NC_006151.1 + 118576 0.67 0.911662
Target:  5'- --gGCACGAGGCGugGcGCGUGccGCu- -3'
miRNA:   3'- uggUGUGCUCUGCugC-CGCACa-UGuc -5'
29567 5' -54.6 NC_006151.1 + 130675 0.67 0.911662
Target:  5'- uGCC-CGCGGGGCG-CGGCGcaggaUGUcCGGg -3'
miRNA:   3'- -UGGuGUGCUCUGCuGCCGC-----ACAuGUC- -5'
29567 5' -54.6 NC_006151.1 + 72257 0.67 0.911662
Target:  5'- gGCCGC-CGAcGcCGAgCGGCGUGgcCAGc -3'
miRNA:   3'- -UGGUGuGCU-CuGCU-GCCGCACauGUC- -5'
29567 5' -54.6 NC_006151.1 + 106191 0.67 0.911662
Target:  5'- cGCCGCugGAGcCGGCGGUGcg-GCu- -3'
miRNA:   3'- -UGGUGugCUCuGCUGCCGCacaUGuc -5'
29567 5' -54.6 NC_006151.1 + 112045 0.67 0.911662
Target:  5'- gGCCgGCGgGcGGGCGGCGGCGgugGUGguGg -3'
miRNA:   3'- -UGG-UGUgC-UCUGCUGCCGCa--CAUguC- -5'
29567 5' -54.6 NC_006151.1 + 82460 0.67 0.911662
Target:  5'- uACCACGCgGAGACGgGCGGgGgcaccaccugGUACGa -3'
miRNA:   3'- -UGGUGUG-CUCUGC-UGCCgCa---------CAUGUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.