miRNA display CGI


Results 21 - 40 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29567 5' -54.6 NC_006151.1 + 90632 0.72 0.700541
Target:  5'- gGCC-CGCGGGcgcuugGCGAUgGGCGUGUACAu -3'
miRNA:   3'- -UGGuGUGCUC------UGCUG-CCGCACAUGUc -5'
29567 5' -54.6 NC_006151.1 + 24216 0.72 0.700541
Target:  5'- aGCCACGCGc-GCGuACuGCGUGUACGGc -3'
miRNA:   3'- -UGGUGUGCucUGC-UGcCGCACAUGUC- -5'
29567 5' -54.6 NC_006151.1 + 30279 0.72 0.700541
Target:  5'- aGCgGCGCGGGGgGAgGGUGUGUAUg- -3'
miRNA:   3'- -UGgUGUGCUCUgCUgCCGCACAUGuc -5'
29567 5' -54.6 NC_006151.1 + 141516 0.71 0.710611
Target:  5'- uCCACGggggcCGAGGCGACGGaCGUGaGCGa -3'
miRNA:   3'- uGGUGU-----GCUCUGCUGCC-GCACaUGUc -5'
29567 5' -54.6 NC_006151.1 + 23002 0.71 0.720614
Target:  5'- gGCCGCGCGGGugGGgGcGCGgggGUGguGg -3'
miRNA:   3'- -UGGUGUGCUCugCUgC-CGCa--CAUguC- -5'
29567 5' -54.6 NC_006151.1 + 72561 0.71 0.740381
Target:  5'- gGCCGCGCGGGAgggUGGgGGCGgGUgACAGa -3'
miRNA:   3'- -UGGUGUGCUCU---GCUgCCGCaCA-UGUC- -5'
29567 5' -54.6 NC_006151.1 + 78451 0.71 0.749155
Target:  5'- uGCUGCGCGAGGCGAccgucuuCGGCGaggUGaUGCGGa -3'
miRNA:   3'- -UGGUGUGCUCUGCU-------GCCGC---AC-AUGUC- -5'
29567 5' -54.6 NC_006151.1 + 18821 0.71 0.750125
Target:  5'- gGCCGCG-GuGGCGACGaGCGUGUAguccCAGg -3'
miRNA:   3'- -UGGUGUgCuCUGCUGC-CGCACAU----GUC- -5'
29567 5' -54.6 NC_006151.1 + 99353 0.7 0.769291
Target:  5'- gGCUGCACGgcGGucguCGGCGGCGUcGUGCAc -3'
miRNA:   3'- -UGGUGUGC--UCu---GCUGCCGCA-CAUGUc -5'
29567 5' -54.6 NC_006151.1 + 125526 0.7 0.769291
Target:  5'- gGCCAucuCGCGGuGcguggaggugcGCGGCGGCGUGUACGu -3'
miRNA:   3'- -UGGU---GUGCU-C-----------UGCUGCCGCACAUGUc -5'
29567 5' -54.6 NC_006151.1 + 56662 0.7 0.778693
Target:  5'- uACCGCugGuGGACGACGGCGccGcGCGc -3'
miRNA:   3'- -UGGUGugC-UCUGCUGCCGCa-CaUGUc -5'
29567 5' -54.6 NC_006151.1 + 33544 0.7 0.787962
Target:  5'- --gAC-CGAGGCGACGGCGgagACGGa -3'
miRNA:   3'- uggUGuGCUCUGCUGCCGCacaUGUC- -5'
29567 5' -54.6 NC_006151.1 + 101476 0.7 0.787962
Target:  5'- uACCGC-CGcGGCGACGuCGUGUACGu -3'
miRNA:   3'- -UGGUGuGCuCUGCUGCcGCACAUGUc -5'
29567 5' -54.6 NC_006151.1 + 113686 0.7 0.797089
Target:  5'- aACCGCuuCGAGG-GGC-GCGUGUGCGGg -3'
miRNA:   3'- -UGGUGu-GCUCUgCUGcCGCACAUGUC- -5'
29567 5' -54.6 NC_006151.1 + 20594 0.7 0.806066
Target:  5'- gGCCGgcacucgucCGCG-GACGACGGCGUGgGguGg -3'
miRNA:   3'- -UGGU---------GUGCuCUGCUGCCGCACaUguC- -5'
29567 5' -54.6 NC_006151.1 + 98202 0.7 0.806066
Target:  5'- cGCCGCGCGGGgucgagugcGCGGCGGCGcccgcGcGCGGa -3'
miRNA:   3'- -UGGUGUGCUC---------UGCUGCCGCa----CaUGUC- -5'
29567 5' -54.6 NC_006151.1 + 121156 0.7 0.806066
Target:  5'- gGCCGCugGugcaGACGGCcGUGUACGc -3'
miRNA:   3'- -UGGUGugCucugCUGCCG-CACAUGUc -5'
29567 5' -54.6 NC_006151.1 + 97882 0.69 0.814884
Target:  5'- cGCCACcaggaaguugaGCGAGACGACGGag-GcGCGGa -3'
miRNA:   3'- -UGGUG-----------UGCUCUGCUGCCgcaCaUGUC- -5'
29567 5' -54.6 NC_006151.1 + 96706 0.69 0.814884
Target:  5'- uCCGCGCcgGGGGCGGCGGCGg--ACGa -3'
miRNA:   3'- uGGUGUG--CUCUGCUGCCGCacaUGUc -5'
29567 5' -54.6 NC_006151.1 + 75390 0.69 0.823534
Target:  5'- cACgGCGCGGGGCGGguGCGUGcGCGGg -3'
miRNA:   3'- -UGgUGUGCUCUGCUgcCGCACaUGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.