miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29570 3' -58.1 NC_006151.1 + 3835 0.66 0.817134
Target:  5'- gCGGGGCuGGagGGCCcgGAGcCGGGGAGGc -3'
miRNA:   3'- -GUCUUG-CCg-UCGGa-CUC-GCUCCUCCu -5'
29570 3' -58.1 NC_006151.1 + 78592 0.66 0.80844
Target:  5'- uGGAGCuGGCGGUCaugaUGAGCGAcgcGGAGa- -3'
miRNA:   3'- gUCUUG-CCGUCGG----ACUCGCU---CCUCcu -5'
29570 3' -58.1 NC_006151.1 + 124851 0.66 0.80844
Target:  5'- gCGGcGCGuguGCAGCCUGGccaaguggcGCGAGGccgAGGAg -3'
miRNA:   3'- -GUCuUGC---CGUCGGACU---------CGCUCC---UCCU- -5'
29570 3' -58.1 NC_006151.1 + 5106 0.66 0.80844
Target:  5'- gCGGAGacggUGGCGGCCcggcgcGGGCGAGuGGGGc -3'
miRNA:   3'- -GUCUU----GCCGUCGGa-----CUCGCUC-CUCCu -5'
29570 3' -58.1 NC_006151.1 + 30014 0.66 0.80844
Target:  5'- -uGAAUGGaGGCagGAGgGGGGAGGAg -3'
miRNA:   3'- guCUUGCCgUCGgaCUCgCUCCUCCU- -5'
29570 3' -58.1 NC_006151.1 + 65728 0.66 0.80844
Target:  5'- gCGGcuGCGcGCGGCCcagGAGCcGGGAGGc -3'
miRNA:   3'- -GUCu-UGC-CGUCGGa--CUCGcUCCUCCu -5'
29570 3' -58.1 NC_006151.1 + 67444 0.66 0.799588
Target:  5'- gGGGAUGGC-GC--GGGCGGGGGGGu -3'
miRNA:   3'- gUCUUGCCGuCGgaCUCGCUCCUCCu -5'
29570 3' -58.1 NC_006151.1 + 10464 0.66 0.799588
Target:  5'- aGGAcGCGGCGGC---GGUGAaGGAGGAg -3'
miRNA:   3'- gUCU-UGCCGUCGgacUCGCU-CCUCCU- -5'
29570 3' -58.1 NC_006151.1 + 82005 0.66 0.794203
Target:  5'- cCAGGGCGGCcGCgugcgccgccgacagCUGGGCGAGGuAGu- -3'
miRNA:   3'- -GUCUUGCCGuCG---------------GACUCGCUCC-UCcu -5'
29570 3' -58.1 NC_006151.1 + 94786 0.66 0.790585
Target:  5'- -uGAGCGGCAGgUUgGGGCGcAGGAGu- -3'
miRNA:   3'- guCUUGCCGUCgGA-CUCGC-UCCUCcu -5'
29570 3' -58.1 NC_006151.1 + 5805 0.66 0.790585
Target:  5'- gCGGGGCuGCcgaggGGCCgggaGAGCcgGAGGAGGAg -3'
miRNA:   3'- -GUCUUGcCG-----UCGGa---CUCG--CUCCUCCU- -5'
29570 3' -58.1 NC_006151.1 + 133500 0.66 0.790585
Target:  5'- ----uUGGCGGCgCgggGGGCGcGGGAGGAg -3'
miRNA:   3'- gucuuGCCGUCG-Ga--CUCGC-UCCUCCU- -5'
29570 3' -58.1 NC_006151.1 + 131911 0.66 0.788767
Target:  5'- gGGGGCGGCAGCagggccuccgcggugCUGccguagcuggccacgGGCGAGGGcGGGc -3'
miRNA:   3'- gUCUUGCCGUCG---------------GAC---------------UCGCUCCU-CCU- -5'
29570 3' -58.1 NC_006151.1 + 15590 0.66 0.78144
Target:  5'- gAGGACGacgaGGCCgagGA-CGAGGAGGAc -3'
miRNA:   3'- gUCUUGCcg--UCGGa--CUcGCUCCUCCU- -5'
29570 3' -58.1 NC_006151.1 + 29584 0.66 0.77867
Target:  5'- aCGGAucGCGGCGGCUgcgGccgcGGCGgcgggggcugguguGGGAGGAg -3'
miRNA:   3'- -GUCU--UGCCGUCGGa--C----UCGC--------------UCCUCCU- -5'
29570 3' -58.1 NC_006151.1 + 10207 0.67 0.763706
Target:  5'- -cGGGCGGCGGCUgcagaggcggcugcgGAcGCGgAGGGGGGc -3'
miRNA:   3'- guCUUGCCGUCGGa--------------CU-CGC-UCCUCCU- -5'
29570 3' -58.1 NC_006151.1 + 9611 0.67 0.762761
Target:  5'- aCGGGGaaGgGGCCggcGGCGAGGGGGGa -3'
miRNA:   3'- -GUCUUgcCgUCGGac-UCGCUCCUCCU- -5'
29570 3' -58.1 NC_006151.1 + 32570 0.67 0.762761
Target:  5'- -cGGGCacccGCGGCC-GGGCgGAGGGGGAa -3'
miRNA:   3'- guCUUGc---CGUCGGaCUCG-CUCCUCCU- -5'
29570 3' -58.1 NC_006151.1 + 62093 0.67 0.762761
Target:  5'- uCGGcGCGGuCGGCCUGGGCGcGGccguGGu -3'
miRNA:   3'- -GUCuUGCC-GUCGGACUCGCuCCu---CCu -5'
29570 3' -58.1 NC_006151.1 + 142133 0.67 0.753244
Target:  5'- gAGGAUGGCGcccgauGCCUGcgccGGCGcAGGGGGc -3'
miRNA:   3'- gUCUUGCCGU------CGGAC----UCGC-UCCUCCu -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.