miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29570 3' -58.1 NC_006151.1 + 10427 0.77 0.244493
Target:  5'- gCGGGugGGCcgaGGCCggcgggGAGgGAGGAGGAg -3'
miRNA:   3'- -GUCUugCCG---UCGGa-----CUCgCUCCUCCU- -5'
29570 3' -58.1 NC_006151.1 + 82690 0.75 0.302188
Target:  5'- gAGGGCGGCGGCCcccGCGAGGgccAGGAg -3'
miRNA:   3'- gUCUUGCCGUCGGacuCGCUCC---UCCU- -5'
29570 3' -58.1 NC_006151.1 + 21068 0.75 0.302188
Target:  5'- uCAGGGCGGCcagGGUCaggGcGGCGAGGAGGAg -3'
miRNA:   3'- -GUCUUGCCG---UCGGa--C-UCGCUCCUCCU- -5'
29570 3' -58.1 NC_006151.1 + 31971 0.75 0.323623
Target:  5'- gCGGGACGuGCccgccGCCUGggagccGGCGAGGAGGAc -3'
miRNA:   3'- -GUCUUGC-CGu----CGGAC------UCGCUCCUCCU- -5'
29570 3' -58.1 NC_006151.1 + 135532 0.73 0.411627
Target:  5'- --cGGCGGCgAGCg-GGGCGGGGAGGAu -3'
miRNA:   3'- gucUUGCCG-UCGgaCUCGCUCCUCCU- -5'
29570 3' -58.1 NC_006151.1 + 30838 0.73 0.411627
Target:  5'- --cGugGGCGGagagGAGCGAGGAGGAc -3'
miRNA:   3'- gucUugCCGUCgga-CUCGCUCCUCCU- -5'
29570 3' -58.1 NC_006151.1 + 133387 0.73 0.411627
Target:  5'- cCGGGGCGGCGGCCgGGGcCGAGcGGGc -3'
miRNA:   3'- -GUCUUGCCGUCGGaCUC-GCUCcUCCu -5'
29570 3' -58.1 NC_006151.1 + 135108 0.72 0.441674
Target:  5'- -cGGGCGGCGGUagcgcgcggggcgggCUGGGCGGGGAcGGGc -3'
miRNA:   3'- guCUUGCCGUCG---------------GACUCGCUCCU-CCU- -5'
29570 3' -58.1 NC_006151.1 + 96714 0.72 0.447104
Target:  5'- gGGGGCGGCGGCg-GA-CGAGGAGGc -3'
miRNA:   3'- gUCUUGCCGUCGgaCUcGCUCCUCCu -5'
29570 3' -58.1 NC_006151.1 + 30948 0.72 0.447104
Target:  5'- gCGGuaucGCGGCGGCCcgggaGAGCGGGcGGGGGa -3'
miRNA:   3'- -GUCu---UGCCGUCGGa----CUCGCUC-CUCCU- -5'
29570 3' -58.1 NC_006151.1 + 139524 0.72 0.473859
Target:  5'- aCAGcAGCGGCAGCgaggcguccagguCgggGAGCGAGGAGcGGc -3'
miRNA:   3'- -GUC-UUGCCGUCG-------------Ga--CUCGCUCCUC-CU- -5'
29570 3' -58.1 NC_006151.1 + 86631 0.72 0.474796
Target:  5'- gAGcGCGuGUGGCacaUGAGCGAGGAGGc -3'
miRNA:   3'- gUCuUGC-CGUCGg--ACUCGCUCCUCCu -5'
29570 3' -58.1 NC_006151.1 + 9732 0.71 0.484217
Target:  5'- gAGAGgGGaggaaaaaaAGUCUaGAGCGGGGAGGAg -3'
miRNA:   3'- gUCUUgCCg--------UCGGA-CUCGCUCCUCCU- -5'
29570 3' -58.1 NC_006151.1 + 33335 0.71 0.493726
Target:  5'- gGGGGCGGgGGCgggGAGaggaGAGGAGGAg -3'
miRNA:   3'- gUCUUGCCgUCGga-CUCg---CUCCUCCU- -5'
29570 3' -58.1 NC_006151.1 + 108682 0.71 0.512993
Target:  5'- cCGGAGCGGCGGCCcGAGCaccuccuGGAGc- -3'
miRNA:   3'- -GUCUUGCCGUCGGaCUCGcu-----CCUCcu -5'
29570 3' -58.1 NC_006151.1 + 27567 0.71 0.532562
Target:  5'- uGGGACGGgGGCCgggUGGGUGGGcGAGGc -3'
miRNA:   3'- gUCUUGCCgUCGG---ACUCGCUC-CUCCu -5'
29570 3' -58.1 NC_006151.1 + 4235 0.7 0.552392
Target:  5'- gGGcGCgGGCAGCCgGAGCGGGcAGGGc -3'
miRNA:   3'- gUCuUG-CCGUCGGaCUCGCUCcUCCU- -5'
29570 3' -58.1 NC_006151.1 + 48910 0.7 0.562392
Target:  5'- gAGuaccGCGGCcgcuGCCUGAcCGAGGAGGu -3'
miRNA:   3'- gUCu---UGCCGu---CGGACUcGCUCCUCCu -5'
29570 3' -58.1 NC_006151.1 + 27926 0.7 0.572439
Target:  5'- gAGAACGGauacgaugAGCCgaucgcgcgGGGUGGGGAGGGa -3'
miRNA:   3'- gUCUUGCCg-------UCGGa--------CUCGCUCCUCCU- -5'
29570 3' -58.1 NC_006151.1 + 3526 0.7 0.582529
Target:  5'- gAGGACaGCAGCgCggGAGCGGGGuccGGAg -3'
miRNA:   3'- gUCUUGcCGUCG-Ga-CUCGCUCCu--CCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.