miRNA display CGI


Results 21 - 40 of 71 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29570 3' -58.1 NC_006151.1 + 3526 0.7 0.582529
Target:  5'- gAGGACaGCAGCgCggGAGCGGGGuccGGAg -3'
miRNA:   3'- gUCUUGcCGUCG-Ga-CUCGCUCCu--CCU- -5'
29570 3' -58.1 NC_006151.1 + 10010 0.7 0.592654
Target:  5'- gAGAGCGGCGGC---GGCGgucgccgcggccAGGAGGAa -3'
miRNA:   3'- gUCUUGCCGUCGgacUCGC------------UCCUCCU- -5'
29570 3' -58.1 NC_006151.1 + 139603 0.7 0.592654
Target:  5'- -cGAGCGGCGGCCcguccGGGCGcggcuGGGGGc -3'
miRNA:   3'- guCUUGCCGUCGGa----CUCGCu----CCUCCu -5'
29570 3' -58.1 NC_006151.1 + 26284 0.69 0.602807
Target:  5'- uGGGGCGGaCGGUg-GGGUGGGGGGGGu -3'
miRNA:   3'- gUCUUGCC-GUCGgaCUCGCUCCUCCU- -5'
29570 3' -58.1 NC_006151.1 + 40566 0.69 0.612982
Target:  5'- gCGGcGGCGGCGGCCgcgGcggagggcucGGCGGcGGAGGAu -3'
miRNA:   3'- -GUC-UUGCCGUCGGa--C----------UCGCU-CCUCCU- -5'
29570 3' -58.1 NC_006151.1 + 66782 0.69 0.633368
Target:  5'- uCGGGACGGCGGCggcgGcGGCGGGGcccgGGGAc -3'
miRNA:   3'- -GUCUUGCCGUCGga--C-UCGCUCC----UCCU- -5'
29570 3' -58.1 NC_006151.1 + 45582 0.69 0.643563
Target:  5'- cCGGGACGGC--CCgaggGGGCGGGG-GGAg -3'
miRNA:   3'- -GUCUUGCCGucGGa---CUCGCUCCuCCU- -5'
29570 3' -58.1 NC_006151.1 + 96895 0.69 0.653749
Target:  5'- -uGAugGGauguGUCUGGGCGGGGcGGGAc -3'
miRNA:   3'- guCUugCCgu--CGGACUCGCUCC-UCCU- -5'
29570 3' -58.1 NC_006151.1 + 41176 0.69 0.653749
Target:  5'- uGGuccuGCGGUGGUCgagggGGGUGGGGGGGGa -3'
miRNA:   3'- gUCu---UGCCGUCGGa----CUCGCUCCUCCU- -5'
29570 3' -58.1 NC_006151.1 + 133626 0.69 0.653749
Target:  5'- gGGGucGCGGCGGCCgGGGCGGuGGuccGGGu -3'
miRNA:   3'- gUCU--UGCCGUCGGaCUCGCU-CCu--CCU- -5'
29570 3' -58.1 NC_006151.1 + 72577 0.68 0.674062
Target:  5'- gGGGGCGGguGaCagagucgGGGUGAGGGGGGg -3'
miRNA:   3'- gUCUUGCCguC-Gga-----CUCGCUCCUCCU- -5'
29570 3' -58.1 NC_006151.1 + 30864 0.68 0.674062
Target:  5'- uGGcGGCGGCGGCg-GAG-GAGGGGGGa -3'
miRNA:   3'- gUC-UUGCCGUCGgaCUCgCUCCUCCU- -5'
29570 3' -58.1 NC_006151.1 + 8477 0.68 0.674062
Target:  5'- -cGGAUGGuCGGUCggacggggcGGGCGGGGAGGGu -3'
miRNA:   3'- guCUUGCC-GUCGGa--------CUCGCUCCUCCU- -5'
29570 3' -58.1 NC_006151.1 + 11719 0.68 0.683163
Target:  5'- gCGGAACgagagggGGgAGCggGGGUGAGGGGGAg -3'
miRNA:   3'- -GUCUUG-------CCgUCGgaCUCGCUCCUCCU- -5'
29570 3' -58.1 NC_006151.1 + 4992 0.68 0.684172
Target:  5'- uGGAGCGGCGcuuCCUGcGCGGGGGccGGGc -3'
miRNA:   3'- gUCUUGCCGUc--GGACuCGCUCCU--CCU- -5'
29570 3' -58.1 NC_006151.1 + 104592 0.68 0.691224
Target:  5'- gCAGGccgGCGGCAGCCgcggcgccGAGaucugccgcgcgcuCGAGGAGGu -3'
miRNA:   3'- -GUCU---UGCCGUCGGa-------CUC--------------GCUCCUCCu -5'
29570 3' -58.1 NC_006151.1 + 14477 0.68 0.694239
Target:  5'- gCGGGugGGCGGg-UGGGCGGGGgucGGGAg -3'
miRNA:   3'- -GUCUugCCGUCggACUCGCUCC---UCCU- -5'
29570 3' -58.1 NC_006151.1 + 45349 0.68 0.694239
Target:  5'- gGGAGCGuGUGGCCcgagugUGAGCGuguauguggagaGGGGGGAc -3'
miRNA:   3'- gUCUUGC-CGUCGG------ACUCGC------------UCCUCCU- -5'
29570 3' -58.1 NC_006151.1 + 75396 0.68 0.704254
Target:  5'- gCGGGGCGGguGCgUGcGCGgguccGGGAGGc -3'
miRNA:   3'- -GUCUUGCCguCGgACuCGC-----UCCUCCu -5'
29570 3' -58.1 NC_006151.1 + 6438 0.68 0.704254
Target:  5'- gAGGAaGGCGGCCgGAG-GAGGAGa- -3'
miRNA:   3'- gUCUUgCCGUCGGaCUCgCUCCUCcu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.