miRNA display CGI


Results 21 - 40 of 71 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29570 3' -58.1 NC_006151.1 + 21068 0.75 0.302188
Target:  5'- uCAGGGCGGCcagGGUCaggGcGGCGAGGAGGAg -3'
miRNA:   3'- -GUCUUGCCG---UCGGa--C-UCGCUCCUCCU- -5'
29570 3' -58.1 NC_006151.1 + 26284 0.69 0.602807
Target:  5'- uGGGGCGGaCGGUg-GGGUGGGGGGGGu -3'
miRNA:   3'- gUCUUGCC-GUCGgaCUCGCUCCUCCU- -5'
29570 3' -58.1 NC_006151.1 + 27464 0.7 0.582529
Target:  5'- gGGGGCgGGCGGUC-GAGCGGGGGGu- -3'
miRNA:   3'- gUCUUG-CCGUCGGaCUCGCUCCUCcu -5'
29570 3' -58.1 NC_006151.1 + 27523 0.67 0.743622
Target:  5'- --cGAUGGgGGCgUGGGgGGGGGGGGg -3'
miRNA:   3'- gucUUGCCgUCGgACUCgCUCCUCCU- -5'
29570 3' -58.1 NC_006151.1 + 27567 0.71 0.532562
Target:  5'- uGGGACGGgGGCCgggUGGGUGGGcGAGGc -3'
miRNA:   3'- gUCUUGCCgUCGG---ACUCGCUC-CUCCu -5'
29570 3' -58.1 NC_006151.1 + 27926 0.7 0.572439
Target:  5'- gAGAACGGauacgaugAGCCgaucgcgcgGGGUGGGGAGGGa -3'
miRNA:   3'- gUCUUGCCg-------UCGGa--------CUCGCUCCUCCU- -5'
29570 3' -58.1 NC_006151.1 + 29584 0.66 0.77867
Target:  5'- aCGGAucGCGGCGGCUgcgGccgcGGCGgcgggggcugguguGGGAGGAg -3'
miRNA:   3'- -GUCU--UGCCGUCGGa--C----UCGC--------------UCCUCCU- -5'
29570 3' -58.1 NC_006151.1 + 30014 0.66 0.80844
Target:  5'- -uGAAUGGaGGCagGAGgGGGGAGGAg -3'
miRNA:   3'- guCUUGCCgUCGgaCUCgCUCCUCCU- -5'
29570 3' -58.1 NC_006151.1 + 30838 0.73 0.411627
Target:  5'- --cGugGGCGGagagGAGCGAGGAGGAc -3'
miRNA:   3'- gucUugCCGUCgga-CUCGCUCCUCCU- -5'
29570 3' -58.1 NC_006151.1 + 30864 0.68 0.674062
Target:  5'- uGGcGGCGGCGGCg-GAG-GAGGGGGGa -3'
miRNA:   3'- gUC-UUGCCGUCGgaCUCgCUCCUCCU- -5'
29570 3' -58.1 NC_006151.1 + 30948 0.72 0.447104
Target:  5'- gCGGuaucGCGGCGGCCcgggaGAGCGGGcGGGGGa -3'
miRNA:   3'- -GUCu---UGCCGUCGGa----CUCGCUC-CUCCU- -5'
29570 3' -58.1 NC_006151.1 + 31971 0.75 0.323623
Target:  5'- gCGGGACGuGCccgccGCCUGggagccGGCGAGGAGGAc -3'
miRNA:   3'- -GUCUUGC-CGu----CGGAC------UCGCUCCUCCU- -5'
29570 3' -58.1 NC_006151.1 + 32570 0.67 0.762761
Target:  5'- -cGGGCacccGCGGCC-GGGCgGAGGGGGAa -3'
miRNA:   3'- guCUUGc---CGUCGGaCUCG-CUCCUCCU- -5'
29570 3' -58.1 NC_006151.1 + 33152 0.67 0.724095
Target:  5'- gAGugcgaGGCGGgUCggGGGCGGGGAGGAa -3'
miRNA:   3'- gUCuug--CCGUC-GGa-CUCGCUCCUCCU- -5'
29570 3' -58.1 NC_006151.1 + 33335 0.71 0.493726
Target:  5'- gGGGGCGGgGGCgggGAGaggaGAGGAGGAg -3'
miRNA:   3'- gUCUUGCCgUCGga-CUCg---CUCCUCCU- -5'
29570 3' -58.1 NC_006151.1 + 36456 0.67 0.71421
Target:  5'- cCGGccccuCGGCAGCCccgcgGAgauggucccccGCGAGGGGGGa -3'
miRNA:   3'- -GUCuu---GCCGUCGGa----CU-----------CGCUCCUCCU- -5'
29570 3' -58.1 NC_006151.1 + 40566 0.69 0.612982
Target:  5'- gCGGcGGCGGCGGCCgcgGcggagggcucGGCGGcGGAGGAu -3'
miRNA:   3'- -GUC-UUGCCGUCGGa--C----------UCGCU-CCUCCU- -5'
29570 3' -58.1 NC_006151.1 + 41176 0.69 0.653749
Target:  5'- uGGuccuGCGGUGGUCgagggGGGUGGGGGGGGa -3'
miRNA:   3'- gUCu---UGCCGUCGGa----CUCGCUCCUCCU- -5'
29570 3' -58.1 NC_006151.1 + 45287 0.68 0.704254
Target:  5'- -uGAGCGGCGGUCgucccgagGAcccGCGAGGccGGGAg -3'
miRNA:   3'- guCUUGCCGUCGGa-------CU---CGCUCC--UCCU- -5'
29570 3' -58.1 NC_006151.1 + 45349 0.68 0.694239
Target:  5'- gGGAGCGuGUGGCCcgagugUGAGCGuguauguggagaGGGGGGAc -3'
miRNA:   3'- gUCUUGC-CGUCGG------ACUCGC------------UCCUCCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.