miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29570 3' -58.1 NC_006151.1 + 3482 0.67 0.733902
Target:  5'- -cGAGCgGGC-GCCgGAGCcggucguccucgGAGGAGGAg -3'
miRNA:   3'- guCUUG-CCGuCGGaCUCG------------CUCCUCCU- -5'
29570 3' -58.1 NC_006151.1 + 3526 0.7 0.582529
Target:  5'- gAGGACaGCAGCgCggGAGCGGGGuccGGAg -3'
miRNA:   3'- gUCUUGcCGUCG-Ga-CUCGCUCCu--CCU- -5'
29570 3' -58.1 NC_006151.1 + 3835 0.66 0.817134
Target:  5'- gCGGGGCuGGagGGCCcgGAGcCGGGGAGGc -3'
miRNA:   3'- -GUCUUG-CCg-UCGGa-CUC-GCUCCUCCu -5'
29570 3' -58.1 NC_006151.1 + 3964 0.67 0.753244
Target:  5'- cCGGGccgcGCGGCGGCCUcGGCGAGccGGc -3'
miRNA:   3'- -GUCU----UGCCGUCGGAcUCGCUCcuCCu -5'
29570 3' -58.1 NC_006151.1 + 4235 0.7 0.552392
Target:  5'- gGGcGCgGGCAGCCgGAGCGGGcAGGGc -3'
miRNA:   3'- gUCuUG-CCGUCGGaCUCGCUCcUCCU- -5'
29570 3' -58.1 NC_006151.1 + 4992 0.68 0.684172
Target:  5'- uGGAGCGGCGcuuCCUGcGCGGGGGccGGGc -3'
miRNA:   3'- gUCUUGCCGUc--GGACuCGCUCCU--CCU- -5'
29570 3' -58.1 NC_006151.1 + 5106 0.66 0.80844
Target:  5'- gCGGAGacggUGGCGGCCcggcgcGGGCGAGuGGGGc -3'
miRNA:   3'- -GUCUU----GCCGUCGGa-----CUCGCUC-CUCCu -5'
29570 3' -58.1 NC_006151.1 + 5805 0.66 0.790585
Target:  5'- gCGGGGCuGCcgaggGGCCgggaGAGCcgGAGGAGGAg -3'
miRNA:   3'- -GUCUUGcCG-----UCGGa---CUCG--CUCCUCCU- -5'
29570 3' -58.1 NC_006151.1 + 6438 0.68 0.704254
Target:  5'- gAGGAaGGCGGCCgGAG-GAGGAGa- -3'
miRNA:   3'- gUCUUgCCGUCGGaCUCgCUCCUCcu -5'
29570 3' -58.1 NC_006151.1 + 8147 0.67 0.743622
Target:  5'- gGGGGCGGguGCaaagGGGCGGGGcccaaaauGGAc -3'
miRNA:   3'- gUCUUGCCguCGga--CUCGCUCCu-------CCU- -5'
29570 3' -58.1 NC_006151.1 + 8477 0.68 0.674062
Target:  5'- -cGGAUGGuCGGUCggacggggcGGGCGGGGAGGGu -3'
miRNA:   3'- guCUUGCC-GUCGGa--------CUCGCUCCUCCU- -5'
29570 3' -58.1 NC_006151.1 + 9611 0.67 0.762761
Target:  5'- aCGGGGaaGgGGCCggcGGCGAGGGGGGa -3'
miRNA:   3'- -GUCUUgcCgUCGGac-UCGCUCCUCCU- -5'
29570 3' -58.1 NC_006151.1 + 9732 0.71 0.484217
Target:  5'- gAGAGgGGaggaaaaaaAGUCUaGAGCGGGGAGGAg -3'
miRNA:   3'- gUCUUgCCg--------UCGGA-CUCGCUCCUCCU- -5'
29570 3' -58.1 NC_006151.1 + 10010 0.7 0.592654
Target:  5'- gAGAGCGGCGGC---GGCGgucgccgcggccAGGAGGAa -3'
miRNA:   3'- gUCUUGCCGUCGgacUCGC------------UCCUCCU- -5'
29570 3' -58.1 NC_006151.1 + 10207 0.67 0.763706
Target:  5'- -cGGGCGGCGGCUgcagaggcggcugcgGAcGCGgAGGGGGGc -3'
miRNA:   3'- guCUUGCCGUCGGa--------------CU-CGC-UCCUCCU- -5'
29570 3' -58.1 NC_006151.1 + 10427 0.77 0.244493
Target:  5'- gCGGGugGGCcgaGGCCggcgggGAGgGAGGAGGAg -3'
miRNA:   3'- -GUCUugCCG---UCGGa-----CUCgCUCCUCCU- -5'
29570 3' -58.1 NC_006151.1 + 10464 0.66 0.799588
Target:  5'- aGGAcGCGGCGGC---GGUGAaGGAGGAg -3'
miRNA:   3'- gUCU-UGCCGUCGgacUCGCU-CCUCCU- -5'
29570 3' -58.1 NC_006151.1 + 11719 0.68 0.683163
Target:  5'- gCGGAACgagagggGGgAGCggGGGUGAGGGGGAg -3'
miRNA:   3'- -GUCUUG-------CCgUCGgaCUCGCUCCUCCU- -5'
29570 3' -58.1 NC_006151.1 + 14477 0.68 0.694239
Target:  5'- gCGGGugGGCGGg-UGGGCGGGGgucGGGAg -3'
miRNA:   3'- -GUCUugCCGUCggACUCGCUCC---UCCU- -5'
29570 3' -58.1 NC_006151.1 + 15590 0.66 0.78144
Target:  5'- gAGGACGacgaGGCCgagGA-CGAGGAGGAc -3'
miRNA:   3'- gUCUUGCcg--UCGGa--CUcGCUCCUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.