miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29570 3' -58.1 NC_006151.1 + 142133 0.67 0.753244
Target:  5'- gAGGAUGGCGcccgauGCCUGcgccGGCGcAGGGGGc -3'
miRNA:   3'- gUCUUGCCGU------CGGAC----UCGC-UCCUCCu -5'
29570 3' -58.1 NC_006151.1 + 139603 0.7 0.592654
Target:  5'- -cGAGCGGCGGCCcguccGGGCGcggcuGGGGGc -3'
miRNA:   3'- guCUUGCCGUCGGa----CUCGCu----CCUCCu -5'
29570 3' -58.1 NC_006151.1 + 139524 0.72 0.473859
Target:  5'- aCAGcAGCGGCAGCgaggcguccagguCgggGAGCGAGGAGcGGc -3'
miRNA:   3'- -GUC-UUGCCGUCG-------------Ga--CUCGCUCCUC-CU- -5'
29570 3' -58.1 NC_006151.1 + 135532 0.73 0.411627
Target:  5'- --cGGCGGCgAGCg-GGGCGGGGAGGAu -3'
miRNA:   3'- gucUUGCCG-UCGgaCUCGCUCCUCCU- -5'
29570 3' -58.1 NC_006151.1 + 135108 0.72 0.441674
Target:  5'- -cGGGCGGCGGUagcgcgcggggcgggCUGGGCGGGGAcGGGc -3'
miRNA:   3'- guCUUGCCGUCG---------------GACUCGCUCCU-CCU- -5'
29570 3' -58.1 NC_006151.1 + 133626 0.69 0.653749
Target:  5'- gGGGucGCGGCGGCCgGGGCGGuGGuccGGGu -3'
miRNA:   3'- gUCU--UGCCGUCGGaCUCGCU-CCu--CCU- -5'
29570 3' -58.1 NC_006151.1 + 133500 0.66 0.790585
Target:  5'- ----uUGGCGGCgCgggGGGCGcGGGAGGAg -3'
miRNA:   3'- gucuuGCCGUCG-Ga--CUCGC-UCCUCCU- -5'
29570 3' -58.1 NC_006151.1 + 133387 0.73 0.411627
Target:  5'- cCGGGGCGGCGGCCgGGGcCGAGcGGGc -3'
miRNA:   3'- -GUCUUGCCGUCGGaCUC-GCUCcUCCu -5'
29570 3' -58.1 NC_006151.1 + 131911 0.66 0.788767
Target:  5'- gGGGGCGGCAGCagggccuccgcggugCUGccguagcuggccacgGGCGAGGGcGGGc -3'
miRNA:   3'- gUCUUGCCGUCG---------------GAC---------------UCGCUCCU-CCU- -5'
29570 3' -58.1 NC_006151.1 + 131735 0.68 0.704254
Target:  5'- gCGGggUGGCgGGCCcGGGCGAGGcGa- -3'
miRNA:   3'- -GUCuuGCCG-UCGGaCUCGCUCCuCcu -5'
29570 3' -58.1 NC_006151.1 + 124851 0.66 0.80844
Target:  5'- gCGGcGCGuguGCAGCCUGGccaaguggcGCGAGGccgAGGAg -3'
miRNA:   3'- -GUCuUGC---CGUCGGACU---------CGCUCC---UCCU- -5'
29570 3' -58.1 NC_006151.1 + 108682 0.71 0.512993
Target:  5'- cCGGAGCGGCGGCCcGAGCaccuccuGGAGc- -3'
miRNA:   3'- -GUCUUGCCGUCGGaCUCGcu-----CCUCcu -5'
29570 3' -58.1 NC_006151.1 + 104592 0.68 0.691224
Target:  5'- gCAGGccgGCGGCAGCCgcggcgccGAGaucugccgcgcgcuCGAGGAGGu -3'
miRNA:   3'- -GUCU---UGCCGUCGGa-------CUC--------------GCUCCUCCu -5'
29570 3' -58.1 NC_006151.1 + 96895 0.69 0.653749
Target:  5'- -uGAugGGauguGUCUGGGCGGGGcGGGAc -3'
miRNA:   3'- guCUugCCgu--CGGACUCGCUCC-UCCU- -5'
29570 3' -58.1 NC_006151.1 + 96714 0.72 0.447104
Target:  5'- gGGGGCGGCGGCg-GA-CGAGGAGGc -3'
miRNA:   3'- gUCUUGCCGUCGgaCUcGCUCCUCCu -5'
29570 3' -58.1 NC_006151.1 + 94786 0.66 0.790585
Target:  5'- -uGAGCGGCAGgUUgGGGCGcAGGAGu- -3'
miRNA:   3'- guCUUGCCGUCgGA-CUCGC-UCCUCcu -5'
29570 3' -58.1 NC_006151.1 + 90395 0.67 0.71421
Target:  5'- gCGGGACGGaCAGCaUGcaggcGGCGAGGAGc- -3'
miRNA:   3'- -GUCUUGCC-GUCGgAC-----UCGCUCCUCcu -5'
29570 3' -58.1 NC_006151.1 + 86631 0.72 0.474796
Target:  5'- gAGcGCGuGUGGCacaUGAGCGAGGAGGc -3'
miRNA:   3'- gUCuUGC-CGUCGg--ACUCGCUCCUCCu -5'
29570 3' -58.1 NC_006151.1 + 82690 0.75 0.302188
Target:  5'- gAGGGCGGCGGCCcccGCGAGGgccAGGAg -3'
miRNA:   3'- gUCUUGCCGUCGGacuCGCUCC---UCCU- -5'
29570 3' -58.1 NC_006151.1 + 82005 0.66 0.794203
Target:  5'- cCAGGGCGGCcGCgugcgccgccgacagCUGGGCGAGGuAGu- -3'
miRNA:   3'- -GUCUUGCCGuCG---------------GACUCGCUCC-UCcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.