miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29570 3' -58.1 NC_006151.1 + 81262 0.67 0.71421
Target:  5'- gCAGGGCGaGCAgcGCCUcGGCGGGGAucucGGGc -3'
miRNA:   3'- -GUCUUGC-CGU--CGGAcUCGCUCCU----CCU- -5'
29570 3' -58.1 NC_006151.1 + 49722 0.67 0.743622
Target:  5'- gGGAGgGGguGCUcggGAGCGAagacggagaGGGGGAc -3'
miRNA:   3'- gUCUUgCCguCGGa--CUCGCU---------CCUCCU- -5'
29570 3' -58.1 NC_006151.1 + 27523 0.67 0.743622
Target:  5'- --cGAUGGgGGCgUGGGgGGGGGGGGg -3'
miRNA:   3'- gucUUGCCgUCGgACUCgCUCCUCCU- -5'
29570 3' -58.1 NC_006151.1 + 10207 0.67 0.763706
Target:  5'- -cGGGCGGCGGCUgcagaggcggcugcgGAcGCGgAGGGGGGc -3'
miRNA:   3'- guCUUGCCGUCGGa--------------CU-CGC-UCCUCCU- -5'
29570 3' -58.1 NC_006151.1 + 62093 0.67 0.762761
Target:  5'- uCGGcGCGGuCGGCCUGGGCGcGGccguGGu -3'
miRNA:   3'- -GUCuUGCC-GUCGGACUCGCuCCu---CCu -5'
29570 3' -58.1 NC_006151.1 + 32570 0.67 0.762761
Target:  5'- -cGGGCacccGCGGCC-GGGCgGAGGGGGAa -3'
miRNA:   3'- guCUUGc---CGUCGGaCUCG-CUCCUCCU- -5'
29570 3' -58.1 NC_006151.1 + 9611 0.67 0.762761
Target:  5'- aCGGGGaaGgGGCCggcGGCGAGGGGGGa -3'
miRNA:   3'- -GUCUUgcCgUCGGac-UCGCUCCUCCU- -5'
29570 3' -58.1 NC_006151.1 + 3964 0.67 0.753244
Target:  5'- cCGGGccgcGCGGCGGCCUcGGCGAGccGGc -3'
miRNA:   3'- -GUCU----UGCCGUCGGAcUCGCUCcuCCu -5'
29570 3' -58.1 NC_006151.1 + 142133 0.67 0.753244
Target:  5'- gAGGAUGGCGcccgauGCCUGcgccGGCGcAGGGGGc -3'
miRNA:   3'- gUCUUGCCGU------CGGAC----UCGC-UCCUCCu -5'
29570 3' -58.1 NC_006151.1 + 72577 0.68 0.674062
Target:  5'- gGGGGCGGguGaCagagucgGGGUGAGGGGGGg -3'
miRNA:   3'- gUCUUGCCguC-Gga-----CUCGCUCCUCCU- -5'
29570 3' -58.1 NC_006151.1 + 8477 0.68 0.674062
Target:  5'- -cGGAUGGuCGGUCggacggggcGGGCGGGGAGGGu -3'
miRNA:   3'- guCUUGCC-GUCGGa--------CUCGCUCCUCCU- -5'
29570 3' -58.1 NC_006151.1 + 11719 0.68 0.683163
Target:  5'- gCGGAACgagagggGGgAGCggGGGUGAGGGGGAg -3'
miRNA:   3'- -GUCUUG-------CCgUCGgaCUCGCUCCUCCU- -5'
29570 3' -58.1 NC_006151.1 + 4992 0.68 0.684172
Target:  5'- uGGAGCGGCGcuuCCUGcGCGGGGGccGGGc -3'
miRNA:   3'- gUCUUGCCGUc--GGACuCGCUCCU--CCU- -5'
29570 3' -58.1 NC_006151.1 + 104592 0.68 0.691224
Target:  5'- gCAGGccgGCGGCAGCCgcggcgccGAGaucugccgcgcgcuCGAGGAGGu -3'
miRNA:   3'- -GUCU---UGCCGUCGGa-------CUC--------------GCUCCUCCu -5'
29570 3' -58.1 NC_006151.1 + 14477 0.68 0.694239
Target:  5'- gCGGGugGGCGGg-UGGGCGGGGgucGGGAg -3'
miRNA:   3'- -GUCUugCCGUCggACUCGCUCC---UCCU- -5'
29570 3' -58.1 NC_006151.1 + 45349 0.68 0.694239
Target:  5'- gGGAGCGuGUGGCCcgagugUGAGCGuguauguggagaGGGGGGAc -3'
miRNA:   3'- gUCUUGC-CGUCGG------ACUCGC------------UCCUCCU- -5'
29570 3' -58.1 NC_006151.1 + 75396 0.68 0.704254
Target:  5'- gCGGGGCGGguGCgUGcGCGgguccGGGAGGc -3'
miRNA:   3'- -GUCUUGCCguCGgACuCGC-----UCCUCCu -5'
29570 3' -58.1 NC_006151.1 + 45287 0.68 0.704254
Target:  5'- -uGAGCGGCGGUCgucccgagGAcccGCGAGGccGGGAg -3'
miRNA:   3'- guCUUGCCGUCGGa-------CU---CGCUCC--UCCU- -5'
29570 3' -58.1 NC_006151.1 + 131735 0.68 0.704254
Target:  5'- gCGGggUGGCgGGCCcGGGCGAGGcGa- -3'
miRNA:   3'- -GUCuuGCCG-UCGGaCUCGCUCCuCcu -5'
29570 3' -58.1 NC_006151.1 + 30864 0.68 0.674062
Target:  5'- uGGcGGCGGCGGCg-GAG-GAGGGGGGa -3'
miRNA:   3'- gUC-UUGCCGUCGgaCUCgCUCCUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.