Results 1 - 20 of 71 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29570 | 3' | -58.1 | NC_006151.1 | + | 10427 | 0.77 | 0.244493 |
Target: 5'- gCGGGugGGCcgaGGCCggcgggGAGgGAGGAGGAg -3' miRNA: 3'- -GUCUugCCG---UCGGa-----CUCgCUCCUCCU- -5' |
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29570 | 3' | -58.1 | NC_006151.1 | + | 131911 | 0.66 | 0.788767 |
Target: 5'- gGGGGCGGCAGCagggccuccgcggugCUGccguagcuggccacgGGCGAGGGcGGGc -3' miRNA: 3'- gUCUUGCCGUCG---------------GAC---------------UCGCUCCU-CCU- -5' |
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29570 | 3' | -58.1 | NC_006151.1 | + | 15590 | 0.66 | 0.78144 |
Target: 5'- gAGGACGacgaGGCCgagGA-CGAGGAGGAc -3' miRNA: 3'- gUCUUGCcg--UCGGa--CUcGCUCCUCCU- -5' |
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29570 | 3' | -58.1 | NC_006151.1 | + | 29584 | 0.66 | 0.77867 |
Target: 5'- aCGGAucGCGGCGGCUgcgGccgcGGCGgcgggggcugguguGGGAGGAg -3' miRNA: 3'- -GUCU--UGCCGUCGGa--C----UCGC--------------UCCUCCU- -5' |
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29570 | 3' | -58.1 | NC_006151.1 | + | 10207 | 0.67 | 0.763706 |
Target: 5'- -cGGGCGGCGGCUgcagaggcggcugcgGAcGCGgAGGGGGGc -3' miRNA: 3'- guCUUGCCGUCGGa--------------CU-CGC-UCCUCCU- -5' |
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29570 | 3' | -58.1 | NC_006151.1 | + | 62093 | 0.67 | 0.762761 |
Target: 5'- uCGGcGCGGuCGGCCUGGGCGcGGccguGGu -3' miRNA: 3'- -GUCuUGCC-GUCGGACUCGCuCCu---CCu -5' |
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29570 | 3' | -58.1 | NC_006151.1 | + | 32570 | 0.67 | 0.762761 |
Target: 5'- -cGGGCacccGCGGCC-GGGCgGAGGGGGAa -3' miRNA: 3'- guCUUGc---CGUCGGaCUCG-CUCCUCCU- -5' |
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29570 | 3' | -58.1 | NC_006151.1 | + | 9611 | 0.67 | 0.762761 |
Target: 5'- aCGGGGaaGgGGCCggcGGCGAGGGGGGa -3' miRNA: 3'- -GUCUUgcCgUCGGac-UCGCUCCUCCU- -5' |
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29570 | 3' | -58.1 | NC_006151.1 | + | 3964 | 0.67 | 0.753244 |
Target: 5'- cCGGGccgcGCGGCGGCCUcGGCGAGccGGc -3' miRNA: 3'- -GUCU----UGCCGUCGGAcUCGCUCcuCCu -5' |
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29570 | 3' | -58.1 | NC_006151.1 | + | 94786 | 0.66 | 0.790585 |
Target: 5'- -uGAGCGGCAGgUUgGGGCGcAGGAGu- -3' miRNA: 3'- guCUUGCCGUCgGA-CUCGC-UCCUCcu -5' |
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29570 | 3' | -58.1 | NC_006151.1 | + | 5805 | 0.66 | 0.790585 |
Target: 5'- gCGGGGCuGCcgaggGGCCgggaGAGCcgGAGGAGGAg -3' miRNA: 3'- -GUCUUGcCG-----UCGGa---CUCG--CUCCUCCU- -5' |
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29570 | 3' | -58.1 | NC_006151.1 | + | 133500 | 0.66 | 0.790585 |
Target: 5'- ----uUGGCGGCgCgggGGGCGcGGGAGGAg -3' miRNA: 3'- gucuuGCCGUCG-Ga--CUCGC-UCCUCCU- -5' |
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29570 | 3' | -58.1 | NC_006151.1 | + | 65728 | 0.66 | 0.80844 |
Target: 5'- gCGGcuGCGcGCGGCCcagGAGCcGGGAGGc -3' miRNA: 3'- -GUCu-UGC-CGUCGGa--CUCGcUCCUCCu -5' |
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29570 | 3' | -58.1 | NC_006151.1 | + | 30014 | 0.66 | 0.80844 |
Target: 5'- -uGAAUGGaGGCagGAGgGGGGAGGAg -3' miRNA: 3'- guCUUGCCgUCGgaCUCgCUCCUCCU- -5' |
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29570 | 3' | -58.1 | NC_006151.1 | + | 5106 | 0.66 | 0.80844 |
Target: 5'- gCGGAGacggUGGCGGCCcggcgcGGGCGAGuGGGGc -3' miRNA: 3'- -GUCUU----GCCGUCGGa-----CUCGCUC-CUCCu -5' |
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29570 | 3' | -58.1 | NC_006151.1 | + | 124851 | 0.66 | 0.80844 |
Target: 5'- gCGGcGCGuguGCAGCCUGGccaaguggcGCGAGGccgAGGAg -3' miRNA: 3'- -GUCuUGC---CGUCGGACU---------CGCUCC---UCCU- -5' |
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29570 | 3' | -58.1 | NC_006151.1 | + | 78592 | 0.66 | 0.80844 |
Target: 5'- uGGAGCuGGCGGUCaugaUGAGCGAcgcGGAGa- -3' miRNA: 3'- gUCUUG-CCGUCGG----ACUCGCU---CCUCcu -5' |
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29570 | 3' | -58.1 | NC_006151.1 | + | 67444 | 0.66 | 0.799588 |
Target: 5'- gGGGAUGGC-GC--GGGCGGGGGGGu -3' miRNA: 3'- gUCUUGCCGuCGgaCUCGCUCCUCCu -5' |
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29570 | 3' | -58.1 | NC_006151.1 | + | 10464 | 0.66 | 0.799588 |
Target: 5'- aGGAcGCGGCGGC---GGUGAaGGAGGAg -3' miRNA: 3'- gUCU-UGCCGUCGgacUCGCU-CCUCCU- -5' |
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29570 | 3' | -58.1 | NC_006151.1 | + | 82005 | 0.66 | 0.794203 |
Target: 5'- cCAGGGCGGCcGCgugcgccgccgacagCUGGGCGAGGuAGu- -3' miRNA: 3'- -GUCUUGCCGuCG---------------GACUCGCUCC-UCcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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