Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29574 | 5' | -60.8 | NC_006151.1 | + | 141807 | 0.78 | 0.142414 |
Target: 5'- --uCCCGCCCCGAGGGcacgggccgguucGGGGGUCcCg -3' miRNA: 3'- aauGGGCGGGGCUCCU-------------UCCCCAGaGa -5' |
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29574 | 5' | -60.8 | NC_006151.1 | + | 141432 | 0.7 | 0.442741 |
Target: 5'- -gGCCCGgcgcgaacgacguCCCCGuAGGAGGGcGGUCUg- -3' miRNA: 3'- aaUGGGC-------------GGGGC-UCCUUCC-CCAGAga -5' |
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29574 | 5' | -60.8 | NC_006151.1 | + | 140391 | 0.68 | 0.566501 |
Target: 5'- cUGCgUGCugCCCGAGGAccuGGGGGaCUCg -3' miRNA: 3'- aAUGgGCG--GGGCUCCU---UCCCCaGAGa -5' |
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29574 | 5' | -60.8 | NC_006151.1 | + | 89158 | 0.73 | 0.308412 |
Target: 5'- -cGCCCGCCUCGGGcGAggcgggcgcGGGGGUCg-- -3' miRNA: 3'- aaUGGGCGGGGCUC-CU---------UCCCCAGaga -5' |
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29574 | 5' | -60.8 | NC_006151.1 | + | 73985 | 0.66 | 0.673446 |
Target: 5'- aUGCCCGCgUCCGgcgccaccgaggccAGGAGGGGcGUCg-- -3' miRNA: 3'- aAUGGGCG-GGGC--------------UCCUUCCC-CAGaga -5' |
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29574 | 5' | -60.8 | NC_006151.1 | + | 70124 | 0.75 | 0.233427 |
Target: 5'- -cGCCCGCgCgCCGcAGGAGGGGGUC-Cg -3' miRNA: 3'- aaUGGGCG-G-GGC-UCCUUCCCCAGaGa -5' |
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29574 | 5' | -60.8 | NC_006151.1 | + | 49710 | 0.73 | 0.281542 |
Target: 5'- -cACCCccuCCCCG-GGAGGGGGUgCUCg -3' miRNA: 3'- aaUGGGc--GGGGCuCCUUCCCCA-GAGa -5' |
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29574 | 5' | -60.8 | NC_006151.1 | + | 43276 | 0.72 | 0.337197 |
Target: 5'- -cGCuCUGCUuuGGGGggGGGGUcCUCg -3' miRNA: 3'- aaUG-GGCGGggCUCCuuCCCCA-GAGa -5' |
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29574 | 5' | -60.8 | NC_006151.1 | + | 41541 | 0.68 | 0.563538 |
Target: 5'- --cCCCGCCCgCGGacccccggugcgacGGAAGGGGcaggCUCg -3' miRNA: 3'- aauGGGCGGG-GCU--------------CCUUCCCCa---GAGa -5' |
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29574 | 5' | -60.8 | NC_006151.1 | + | 40095 | 0.73 | 0.294739 |
Target: 5'- -gGCCgGCCCCggcGAGGAcGGGGaCUCUg -3' miRNA: 3'- aaUGGgCGGGG---CUCCUuCCCCaGAGA- -5' |
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29574 | 5' | -60.8 | NC_006151.1 | + | 39050 | 0.66 | 0.656458 |
Target: 5'- aUAgCCGaCCCCGAGGAcgugcgcguGGuGGUgCUCUa -3' miRNA: 3'- aAUgGGC-GGGGCUCCUu--------CC-CCA-GAGA- -5' |
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29574 | 5' | -60.8 | NC_006151.1 | + | 38915 | 0.67 | 0.616343 |
Target: 5'- -gGCCCGCgCCuCGuGGAccAGGaGGUCUUc -3' miRNA: 3'- aaUGGGCG-GG-GCuCCU--UCC-CCAGAGa -5' |
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29574 | 5' | -60.8 | NC_006151.1 | + | 38593 | 0.74 | 0.254763 |
Target: 5'- ---gCCGCCCCGGGGAcggcgaggaggacgAGGGGcUCUCc -3' miRNA: 3'- aaugGGCGGGGCUCCU--------------UCCCC-AGAGa -5' |
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29574 | 5' | -60.8 | NC_006151.1 | + | 34123 | 0.7 | 0.44363 |
Target: 5'- -cACCCGCCCCcccaccGGgcGGGGUC-Cg -3' miRNA: 3'- aaUGGGCGGGGcu----CCuuCCCCAGaGa -5' |
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29574 | 5' | -60.8 | NC_006151.1 | + | 34028 | 0.7 | 0.456184 |
Target: 5'- -gGCCCuCCCCGccGGGAAGGGGacccggcccucuucgUCUCc -3' miRNA: 3'- aaUGGGcGGGGC--UCCUUCCCC---------------AGAGa -5' |
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29574 | 5' | -60.8 | NC_006151.1 | + | 33887 | 0.75 | 0.233427 |
Target: 5'- -gACCC-CCCCGGGGGcGGGGGcCUCg -3' miRNA: 3'- aaUGGGcGGGGCUCCU-UCCCCaGAGa -5' |
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29574 | 5' | -60.8 | NC_006151.1 | + | 33229 | 0.68 | 0.54683 |
Target: 5'- ----gCGCCCCGgcgggcGGGAGGGGGUC-Cg -3' miRNA: 3'- aauggGCGGGGC------UCCUUCCCCAGaGa -5' |
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29574 | 5' | -60.8 | NC_006151.1 | + | 30682 | 0.66 | 0.66646 |
Target: 5'- -aGCCUcCCCCGGcGGGcggGGGGGUgUCg -3' miRNA: 3'- aaUGGGcGGGGCU-CCU---UCCCCAgAGa -5' |
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29574 | 5' | -60.8 | NC_006151.1 | + | 29243 | 0.68 | 0.566501 |
Target: 5'- -gGCCgCGCCCCGAGGGacAGGGaa-UCc -3' miRNA: 3'- aaUGG-GCGGGGCUCCU--UCCCcagAGa -5' |
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29574 | 5' | -60.8 | NC_006151.1 | + | 29186 | 0.68 | 0.517753 |
Target: 5'- -cGCCCGCuCUCGAGGAaaaAGGGG-Cg-- -3' miRNA: 3'- aaUGGGCG-GGGCUCCU---UCCCCaGaga -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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