miRNA display CGI


Results 21 - 40 of 390 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29575 5' -62.9 NC_006151.1 + 20114 0.77 0.153538
Target:  5'- -gGCGccCCGGCGACGGggcuggGGGGCGGgCg -3'
miRNA:   3'- ggCGCu-GGCCGCUGCUa-----CCCCGCCgG- -5'
29575 5' -62.9 NC_006151.1 + 120829 0.77 0.157263
Target:  5'- aCGCG-CCGcGCGACGAcacGuGGGUGGCCa -3'
miRNA:   3'- gGCGCuGGC-CGCUGCUa--C-CCCGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 41485 0.77 0.16107
Target:  5'- aCgGCGACCGcGUGGCGcgaggggagccaAUGGGGCGGgCg -3'
miRNA:   3'- -GgCGCUGGC-CGCUGC------------UACCCCGCCgG- -5'
29575 5' -62.9 NC_006151.1 + 118004 0.76 0.172995
Target:  5'- gCCGCGucucgucucACCcGCGACGAUGGaGGCcgcGGCCa -3'
miRNA:   3'- -GGCGC---------UGGcCGCUGCUACC-CCG---CCGG- -5'
29575 5' -62.9 NC_006151.1 + 96942 0.76 0.177141
Target:  5'- aUCGCGGgCGGgagaGACGAUGGGGUGaGUCa -3'
miRNA:   3'- -GGCGCUgGCCg---CUGCUACCCCGC-CGG- -5'
29575 5' -62.9 NC_006151.1 + 112053 0.76 0.177141
Target:  5'- -gGCGGgCGGCGGCGGUGGuGGUggGGCUg -3'
miRNA:   3'- ggCGCUgGCCGCUGCUACC-CCG--CCGG- -5'
29575 5' -62.9 NC_006151.1 + 133277 0.76 0.178824
Target:  5'- -gGCGAgCCGGCGGCGGcccacgucgagguucUccccgGGGGCGGCCc -3'
miRNA:   3'- ggCGCU-GGCCGCUGCU---------------A-----CCCCGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 118879 0.76 0.181376
Target:  5'- gCgGCGGCgCGGCGGCGAcgcGGccgccGGCGGCCu -3'
miRNA:   3'- -GgCGCUG-GCCGCUGCUa--CC-----CCGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 91674 0.76 0.181376
Target:  5'- cCUGCG-CCGgguggugcGCGugGGUGGGGUGGCg -3'
miRNA:   3'- -GGCGCuGGC--------CGCugCUACCCCGCCGg -5'
29575 5' -62.9 NC_006151.1 + 121227 0.76 0.185263
Target:  5'- cCCGaCGACUGGCgGGCGAucgUGGacgacgaguuccuGGCGGCCg -3'
miRNA:   3'- -GGC-GCUGGCCG-CUGCU---ACC-------------CCGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 19416 0.76 0.1857
Target:  5'- gCgGCGACCaccgcuccggGGUGACGAU-GGGCGGCUc -3'
miRNA:   3'- -GgCGCUGG----------CCGCUGCUAcCCCGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 36042 0.76 0.191906
Target:  5'- gCCGCGGcuccuCCGGCGAgGAUcuccucuucggcccGGGCGGCCu -3'
miRNA:   3'- -GGCGCU-----GGCCGCUgCUAc-------------CCCGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 32075 0.75 0.194621
Target:  5'- gCCGCGACCGGCGAacgcaGAgagGGGacGCGGg- -3'
miRNA:   3'- -GGCGCUGGCCGCUg----CUa--CCC--CGCCgg -5'
29575 5' -62.9 NC_006151.1 + 50019 0.75 0.194621
Target:  5'- gCGCGGcCCGcGCGGCGcccccGGGcGCGGCCa -3'
miRNA:   3'- gGCGCU-GGC-CGCUGCua---CCC-CGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 54076 0.75 0.199221
Target:  5'- gCGCgGACCcucuGCGGCGgcGGcGGCGGCCa -3'
miRNA:   3'- gGCG-CUGGc---CGCUGCuaCC-CCGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 57505 0.75 0.199221
Target:  5'- aCGCGcUCGGCcGCGgcGGcGGCGGCCg -3'
miRNA:   3'- gGCGCuGGCCGcUGCuaCC-CCGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 71772 0.75 0.203915
Target:  5'- cCUGCGGCagCGGCGGCG--GGGGCuGCCg -3'
miRNA:   3'- -GGCGCUG--GCCGCUGCuaCCCCGcCGG- -5'
29575 5' -62.9 NC_006151.1 + 78637 0.75 0.203915
Target:  5'- aCGcCGACgCGuGCGAgcUGGUGGaGGCGGCCg -3'
miRNA:   3'- gGC-GCUG-GC-CGCU--GCUACC-CCGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 121949 0.75 0.20582
Target:  5'- gCCGCcGCCGGCGACGAcgccgaggccuacuuUGagcgcaccauGGGCGGCg -3'
miRNA:   3'- -GGCGcUGGCCGCUGCU---------------AC----------CCCGCCGg -5'
29575 5' -62.9 NC_006151.1 + 68002 0.75 0.208705
Target:  5'- gCCGCGGCCacgggcucGGCGGCGuccaGGuccaGGCGGCCc -3'
miRNA:   3'- -GGCGCUGG--------CCGCUGCua--CC----CCGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.