miRNA display CGI


Results 1 - 20 of 390 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29575 5' -62.9 NC_006151.1 + 143054 0.7 0.433863
Target:  5'- aCCGCGACgaUGGUGGgGGauUGGGGuUGGCa -3'
miRNA:   3'- -GGCGCUG--GCCGCUgCU--ACCCC-GCCGg -5'
29575 5' -62.9 NC_006151.1 + 142240 0.67 0.59668
Target:  5'- gUCGCGACgaGGCGuCGGUcaucgcggcgaGGagcgccccgucccGGCGGCCa -3'
miRNA:   3'- -GGCGCUGg-CCGCuGCUA-----------CC-------------CCGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 141988 0.67 0.559605
Target:  5'- -gGCGGCCcgggaaaaagaGcGCGGCG-UGGGGCGGgUg -3'
miRNA:   3'- ggCGCUGG-----------C-CGCUGCuACCCCGCCgG- -5'
29575 5' -62.9 NC_006151.1 + 141697 0.67 0.559605
Target:  5'- aCgGCGGCUGGCGGCGGacgcggugcccGGGGCGuuaauacCCa -3'
miRNA:   3'- -GgCGCUGGCCGCUGCUa----------CCCCGCc------GG- -5'
29575 5' -62.9 NC_006151.1 + 141641 0.69 0.442322
Target:  5'- gCCGCGG-CGGCG-CGgcGGGGCcccgcgGGCUc -3'
miRNA:   3'- -GGCGCUgGCCGCuGCuaCCCCG------CCGG- -5'
29575 5' -62.9 NC_006151.1 + 141406 0.77 0.149892
Target:  5'- gCGUGuCCGGCGAuCGGUgcGGGcGCGGCCc -3'
miRNA:   3'- gGCGCuGGCCGCU-GCUA--CCC-CGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 141286 0.67 0.606256
Target:  5'- gCUGCGGuCCGaUGACGGUGGGcucguacGCGGgCg -3'
miRNA:   3'- -GGCGCU-GGCcGCUGCUACCC-------CGCCgG- -5'
29575 5' -62.9 NC_006151.1 + 139622 0.69 0.483277
Target:  5'- gCGCGGCUGGgggccauccggcgcCGGCGcgGGGgucGCGGCg -3'
miRNA:   3'- gGCGCUGGCC--------------GCUGCuaCCC---CGCCGg -5'
29575 5' -62.9 NC_006151.1 + 138603 0.73 0.29274
Target:  5'- aCGCGGCgcugccgcuCGGCGAgGAcgccgccgGGGGCGcGCCg -3'
miRNA:   3'- gGCGCUG---------GCCGCUgCUa-------CCCCGC-CGG- -5'
29575 5' -62.9 NC_006151.1 + 138253 0.72 0.31921
Target:  5'- gCGCGACCGcGCaGCG--GGuGGUGGCCa -3'
miRNA:   3'- gGCGCUGGC-CGcUGCuaCC-CCGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 137739 0.7 0.40906
Target:  5'- gCgGUGGCCGGCGcCGAcacGGuccGCGGCCu -3'
miRNA:   3'- -GgCGCUGGCCGCuGCUa--CCc--CGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 137518 0.75 0.218576
Target:  5'- gCCGCGcCgGGCGACGAggacuGGGCGGaCUg -3'
miRNA:   3'- -GGCGCuGgCCGCUGCUac---CCCGCC-GG- -5'
29575 5' -62.9 NC_006151.1 + 137266 0.69 0.442322
Target:  5'- gCGCGcCCGGUGccCGcgGGcacgcucgaGGCGGCCa -3'
miRNA:   3'- gGCGCuGGCCGCu-GCuaCC---------CCGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 137142 0.7 0.40019
Target:  5'- gCGCGACgCGGCGccggaGAUGGccgcgcacgagccGGCGGCg -3'
miRNA:   3'- gGCGCUG-GCCGCug---CUACC-------------CCGCCGg -5'
29575 5' -62.9 NC_006151.1 + 137104 0.72 0.340216
Target:  5'- gUGCuGGCCGGgGACGccugGGGGCGcGCg -3'
miRNA:   3'- gGCG-CUGGCCgCUGCua--CCCCGC-CGg -5'
29575 5' -62.9 NC_006151.1 + 136813 0.67 0.588081
Target:  5'- cUCGCGGCCGacGCGccGCGcgGGcucugcgacGCGGCCg -3'
miRNA:   3'- -GGCGCUGGC--CGC--UGCuaCCc--------CGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 136631 0.66 0.664804
Target:  5'- aCG-GACCccGCGGCGcccGUGGGGCGcucGCCc -3'
miRNA:   3'- gGCgCUGGc-CGCUGC---UACCCCGC---CGG- -5'
29575 5' -62.9 NC_006151.1 + 136273 0.7 0.41723
Target:  5'- cCCGCGGCCGGCcuACGAccUGcGGGCccucaaGGaCCu -3'
miRNA:   3'- -GGCGCUGGCCGc-UGCU--AC-CCCG------CC-GG- -5'
29575 5' -62.9 NC_006151.1 + 135953 0.7 0.425498
Target:  5'- cUCGCGGCgCGG-GACGuccucgaggccAUGGacgaGGCGGCCa -3'
miRNA:   3'- -GGCGCUG-GCCgCUGC-----------UACC----CCGCCGG- -5'
29575 5' -62.9 NC_006151.1 + 135525 0.7 0.433863
Target:  5'- aCGUccUCGGCGGCGAgcGGGGCGGg- -3'
miRNA:   3'- gGCGcuGGCCGCUGCUa-CCCCGCCgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.