miRNA display CGI


Results 21 - 40 of 231 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29581 5' -56.5 NC_006151.1 + 57261 0.74 0.454408
Target:  5'- cGCGcGGcCCUCGACGGCcuCGCGCAg -3'
miRNA:   3'- cCGCuCUuGGAGCUGCCGu-GCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 103832 0.73 0.473008
Target:  5'- cGGCcgugGAGAugCUCgGGCGGCugcGCGCGCAg -3'
miRNA:   3'- -CCG----CUCUugGAG-CUGCCG---UGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 76254 0.73 0.472069
Target:  5'- -cCGAGGGCCUCGACGGCgaucgagaaggcgGCGUugAg -3'
miRNA:   3'- ccGCUCUUGGAGCUGCCG-------------UGCGugUa -5'
29581 5' -56.5 NC_006151.1 + 2415 0.73 0.501604
Target:  5'- cGGCGAGGcCC-CGGCGGC-CGCAgGa -3'
miRNA:   3'- -CCGCUCUuGGaGCUGCCGuGCGUgUa -5'
29581 5' -56.5 NC_006151.1 + 130839 0.73 0.501604
Target:  5'- cGGCGcGGAgucgucGCCgUCGGCGGCGCGgGCGg -3'
miRNA:   3'- -CCGC-UCU------UGG-AGCUGCCGUGCgUGUa -5'
29581 5' -56.5 NC_006151.1 + 18561 0.73 0.521083
Target:  5'- cGCGAGGccGCC-CGGCGGCGggaGCACAg -3'
miRNA:   3'- cCGCUCU--UGGaGCUGCCGUg--CGUGUa -5'
29581 5' -56.5 NC_006151.1 + 4363 0.73 0.473008
Target:  5'- gGGCgcaGAGGGCCUCGACGGUcgccuccccgGCGCGgGg -3'
miRNA:   3'- -CCG---CUCUUGGAGCUGCCG----------UGCGUgUa -5'
29581 5' -56.5 NC_006151.1 + 59481 0.73 0.501604
Target:  5'- cGGCGAGGcgcccucgaagaGCC-CGGCGGCcuccgcgacgcGCGCGCAg -3'
miRNA:   3'- -CCGCUCU------------UGGaGCUGCCG-----------UGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 65039 0.73 0.473008
Target:  5'- cGGCaGGGGGCCcggCGGCGGCGgGCGCc- -3'
miRNA:   3'- -CCG-CUCUUGGa--GCUGCCGUgCGUGua -5'
29581 5' -56.5 NC_006151.1 + 141254 0.73 0.525014
Target:  5'- gGGCGAGGagauccagucgcgggGCCUCGGCGGCuGCGguCc- -3'
miRNA:   3'- -CCGCUCU---------------UGGAGCUGCCG-UGCguGua -5'
29581 5' -56.5 NC_006151.1 + 64231 0.73 0.521083
Target:  5'- cGGCGuacAGGGCCgCGACGGCG-GCGCGg -3'
miRNA:   3'- -CCGC---UCUUGGaGCUGCCGUgCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 97352 0.73 0.473008
Target:  5'- cGCGGGGaagGCCgcggCGGCGGCGgGCGCGg -3'
miRNA:   3'- cCGCUCU---UGGa---GCUGCCGUgCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 6483 0.73 0.491985
Target:  5'- gGGcCGAGAGCCUCGGUGGguCGgGCGUc -3'
miRNA:   3'- -CC-GCUCUUGGAGCUGCCguGCgUGUA- -5'
29581 5' -56.5 NC_006151.1 + 120816 0.72 0.581071
Target:  5'- cGCGAGGugCUgGACGcGC-CGCGCGa -3'
miRNA:   3'- cCGCUCUugGAgCUGC-CGuGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 70624 0.72 0.581071
Target:  5'- --gGAGAuCCUCGGCGGCgccguggccGCGCGCGa -3'
miRNA:   3'- ccgCUCUuGGAGCUGCCG---------UGCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 135095 0.72 0.550828
Target:  5'- cGGCG-GGGCCgggcgggCGGCGGUAgCGCGCGg -3'
miRNA:   3'- -CCGCuCUUGGa------GCUGCCGU-GCGUGUa -5'
29581 5' -56.5 NC_006151.1 + 127675 0.72 0.550828
Target:  5'- gGGCGGGAAcuCCUCGuCGGCG-GCGCu- -3'
miRNA:   3'- -CCGCUCUU--GGAGCuGCCGUgCGUGua -5'
29581 5' -56.5 NC_006151.1 + 133476 0.72 0.578029
Target:  5'- cGCGAGGcggccgcgggcgucACCUUGGCGGCGCgggggGCGCGg -3'
miRNA:   3'- cCGCUCU--------------UGGAGCUGCCGUG-----CGUGUa -5'
29581 5' -56.5 NC_006151.1 + 78535 0.72 0.581071
Target:  5'- cGGCGGGGGCCUCGcCGccgacgacgaaGCACGCcCGg -3'
miRNA:   3'- -CCGCUCUUGGAGCuGC-----------CGUGCGuGUa -5'
29581 5' -56.5 NC_006151.1 + 88935 0.72 0.569934
Target:  5'- cGGCGGuagaagcGGACCUCGAaggucucccCGGCGCGCGgGa -3'
miRNA:   3'- -CCGCU-------CUUGGAGCU---------GCCGUGCGUgUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.