Results 1 - 20 of 297 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29583 | 3' | -60.9 | NC_006151.1 | + | 92512 | 0.66 | 0.707033 |
Target: 5'- uGCGCUGccacaCGGACcUGCAC-CGGGCGc -3' miRNA: 3'- -UGCGACc----GCCUGuGCGUGcGCCUGCa -5' |
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29583 | 3' | -60.9 | NC_006151.1 | + | 39949 | 0.66 | 0.715735 |
Target: 5'- cCGCUGGUgcugaccccGGGCGCcgucgccGC-CGCGGGCGc -3' miRNA: 3'- uGCGACCG---------CCUGUG-------CGuGCGCCUGCa -5' |
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29583 | 3' | -60.9 | NC_006151.1 | + | 103494 | 0.66 | 0.715735 |
Target: 5'- gGCGcCUGGUGG-CGCGCuacCGCGagcugcuGACGUc -3' miRNA: 3'- -UGC-GACCGCCuGUGCGu--GCGC-------CUGCA- -5' |
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29583 | 3' | -60.9 | NC_006151.1 | + | 89975 | 0.66 | 0.713805 |
Target: 5'- -gGCUGGCGacguaggugcacguGcCGCGCAggcUGCGGGCGa -3' miRNA: 3'- ugCGACCGC--------------CuGUGCGU---GCGCCUGCa -5' |
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29583 | 3' | -60.9 | NC_006151.1 | + | 52155 | 0.66 | 0.710907 |
Target: 5'- gACGCUGuCcacgugcgucucgaaGGGCGCGCGCGCGaACGc -3' miRNA: 3'- -UGCGACcG---------------CCUGUGCGUGCGCcUGCa -5' |
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29583 | 3' | -60.9 | NC_006151.1 | + | 113222 | 0.66 | 0.707033 |
Target: 5'- aGCGCcGGCac-CGCGC-CGUGGACGa -3' miRNA: 3'- -UGCGaCCGccuGUGCGuGCGCCUGCa -5' |
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29583 | 3' | -60.9 | NC_006151.1 | + | 99547 | 0.66 | 0.707033 |
Target: 5'- cACGgaGcacGUGGGCGCgGCGCGCGcGGCGc -3' miRNA: 3'- -UGCgaC---CGCCUGUG-CGUGCGC-CUGCa -5' |
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29583 | 3' | -60.9 | NC_006151.1 | + | 50001 | 0.66 | 0.707033 |
Target: 5'- cGCGUUuGCGcGcCGCGCGCGCGGcccgcGCGg -3' miRNA: 3'- -UGCGAcCGC-CuGUGCGUGCGCC-----UGCa -5' |
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29583 | 3' | -60.9 | NC_006151.1 | + | 26353 | 0.66 | 0.707033 |
Target: 5'- -gGCggcGGCGGGCcgcgucgggGCGCGCgucccccgGCGGGCGg -3' miRNA: 3'- ugCGa--CCGCCUG---------UGCGUG--------CGCCUGCa -5' |
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29583 | 3' | -60.9 | NC_006151.1 | + | 78652 | 0.66 | 0.716698 |
Target: 5'- -aGCUGGUGGAgGCGgCcgggGCGCGGGUGc -3' miRNA: 3'- ugCGACCGCCUgUGC-G----UGCGCCUGCa -5' |
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29583 | 3' | -60.9 | NC_006151.1 | + | 105900 | 0.66 | 0.716698 |
Target: 5'- -aGCUGGCGGcCAUGCugugcaccgACGaGGGCGc -3' miRNA: 3'- ugCGACCGCCuGUGCG---------UGCgCCUGCa -5' |
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29583 | 3' | -60.9 | NC_006151.1 | + | 40760 | 0.66 | 0.716698 |
Target: 5'- gAUGgaGGCGGcCAUcUugGCGGugGUc -3' miRNA: 3'- -UGCgaCCGCCuGUGcGugCGCCugCA- -5' |
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29583 | 3' | -60.9 | NC_006151.1 | + | 4028 | 0.66 | 0.716698 |
Target: 5'- gGCGUagguccaGGCGGccuCGCGgGCGCGGGCc- -3' miRNA: 3'- -UGCGa------CCGCCu--GUGCgUGCGCCUGca -5' |
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29583 | 3' | -60.9 | NC_006151.1 | + | 133157 | 0.66 | 0.716698 |
Target: 5'- -gGC-GGCGG-CGCGgGCGUGGGCc- -3' miRNA: 3'- ugCGaCCGCCuGUGCgUGCGCCUGca -5' |
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29583 | 3' | -60.9 | NC_006151.1 | + | 106697 | 0.66 | 0.716698 |
Target: 5'- gGCGCcGGCGaccuguACGCGCcCGUGGGCa- -3' miRNA: 3'- -UGCGaCCGCc-----UGUGCGuGCGCCUGca -5' |
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29583 | 3' | -60.9 | NC_006151.1 | + | 103540 | 0.66 | 0.716698 |
Target: 5'- cGCGCUGGUGGGCGC-CGgGCaGcCGc -3' miRNA: 3'- -UGCGACCGCCUGUGcGUgCGcCuGCa -5' |
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29583 | 3' | -60.9 | NC_006151.1 | + | 100114 | 0.66 | 0.716698 |
Target: 5'- uCGCUGGCGGccaGCGCcuuccuCGgGGACc- -3' miRNA: 3'- uGCGACCGCCug-UGCGu-----GCgCCUGca -5' |
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29583 | 3' | -60.9 | NC_006151.1 | + | 99075 | 0.66 | 0.716698 |
Target: 5'- uGCGCccgggcaccgUGGCGcGGCgccuGCGCACGgaccaGGGCGUg -3' miRNA: 3'- -UGCG----------ACCGC-CUG----UGCGUGCg----CCUGCA- -5' |
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29583 | 3' | -60.9 | NC_006151.1 | + | 87359 | 0.66 | 0.716698 |
Target: 5'- gGC-CUGGCGGcccccguCGCGCACGUccccgcccaGGugGUc -3' miRNA: 3'- -UGcGACCGCCu------GUGCGUGCG---------CCugCA- -5' |
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29583 | 3' | -60.9 | NC_006151.1 | + | 71566 | 0.66 | 0.716698 |
Target: 5'- gGCGagggGGaCGGGCGgGCAuccucCGCGGGCGc -3' miRNA: 3'- -UGCga--CC-GCCUGUgCGU-----GCGCCUGCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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