miRNA display CGI


Results 21 - 40 of 297 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29583 3' -60.9 NC_006151.1 + 121271 0.76 0.206074
Target:  5'- cGCGCUGGCGGAgaucaaCGgGCGCGUGGcCGa -3'
miRNA:   3'- -UGCGACCGCCU------GUgCGUGCGCCuGCa -5'
29583 3' -60.9 NC_006151.1 + 58437 0.76 0.216159
Target:  5'- cACGCcucggUGGCGuGCGCGCGCGCGG-CGUc -3'
miRNA:   3'- -UGCG-----ACCGCcUGUGCGUGCGCCuGCA- -5'
29583 3' -60.9 NC_006151.1 + 122401 0.75 0.221359
Target:  5'- cGCGCUGGCGGcGCucgcCGC-CGUGGACGc -3'
miRNA:   3'- -UGCGACCGCC-UGu---GCGuGCGCCUGCa -5'
29583 3' -60.9 NC_006151.1 + 98219 0.75 0.221359
Target:  5'- uGCGC-GGCGGcGCcCGCGCGCGGACc- -3'
miRNA:   3'- -UGCGaCCGCC-UGuGCGUGCGCCUGca -5'
29583 3' -60.9 NC_006151.1 + 96868 0.75 0.226664
Target:  5'- cCGCcgGGCGcGGCGCGCGCGgGGGCa- -3'
miRNA:   3'- uGCGa-CCGC-CUGUGCGUGCgCCUGca -5'
29583 3' -60.9 NC_006151.1 + 4343 0.75 0.226664
Target:  5'- gGCGaaGGCGG-CGCGgACGCGGGCGc -3'
miRNA:   3'- -UGCgaCCGCCuGUGCgUGCGCCUGCa -5'
29583 3' -60.9 NC_006151.1 + 64480 0.75 0.232077
Target:  5'- cCGC-GGCGGGgACGCcCGCGGGCGc -3'
miRNA:   3'- uGCGaCCGCCUgUGCGuGCGCCUGCa -5'
29583 3' -60.9 NC_006151.1 + 122489 0.75 0.232077
Target:  5'- gACGCgGGCGagacGGCGCGCcggcGCGCGGACGc -3'
miRNA:   3'- -UGCGaCCGC----CUGUGCG----UGCGCCUGCa -5'
29583 3' -60.9 NC_006151.1 + 88684 0.75 0.232077
Target:  5'- cCGUUGGCGGACA-GCACGCGccACGUg -3'
miRNA:   3'- uGCGACCGCCUGUgCGUGCGCc-UGCA- -5'
29583 3' -60.9 NC_006151.1 + 100346 0.75 0.237042
Target:  5'- gGCGuCUGGCGGACgucguggACGC-CGUGGGCGc -3'
miRNA:   3'- -UGC-GACCGCCUG-------UGCGuGCGCCUGCa -5'
29583 3' -60.9 NC_006151.1 + 62049 0.75 0.237042
Target:  5'- cCGCgUGGCGGuGCACGCGCGCGccgucguGACGa -3'
miRNA:   3'- uGCG-ACCGCC-UGUGCGUGCGC-------CUGCa -5'
29583 3' -60.9 NC_006151.1 + 55466 0.75 0.237599
Target:  5'- cCGCcGGgGGGCGCGCGCccggcgccGCGGACGg -3'
miRNA:   3'- uGCGaCCgCCUGUGCGUG--------CGCCUGCa -5'
29583 3' -60.9 NC_006151.1 + 119427 0.75 0.239838
Target:  5'- aGCGCUGcgacGCGGGCACGUucgugggccgcggcgACGUGGACGc -3'
miRNA:   3'- -UGCGAC----CGCCUGUGCG---------------UGCGCCUGCa -5'
29583 3' -60.9 NC_006151.1 + 102917 0.75 0.242661
Target:  5'- uCGCUGGCGGccgccgaggagcgGCuGCGCGCGCuGGACGc -3'
miRNA:   3'- uGCGACCGCC-------------UG-UGCGUGCG-CCUGCa -5'
29583 3' -60.9 NC_006151.1 + 115200 0.75 0.243229
Target:  5'- aGCGCgccGCGGGCGCGCGCGCGauCGUg -3'
miRNA:   3'- -UGCGac-CGCCUGUGCGUGCGCcuGCA- -5'
29583 3' -60.9 NC_006151.1 + 103570 0.75 0.243229
Target:  5'- gGCGCUGGUcaACGCGCuCGCGGACa- -3'
miRNA:   3'- -UGCGACCGccUGUGCGuGCGCCUGca -5'
29583 3' -60.9 NC_006151.1 + 135121 0.75 0.243229
Target:  5'- cGCGCggGGCGGGCugG-GCGgGGACGg -3'
miRNA:   3'- -UGCGa-CCGCCUGugCgUGCgCCUGCa -5'
29583 3' -60.9 NC_006151.1 + 55881 0.75 0.243229
Target:  5'- gGCGCUgucgcGGCGGACGUGCGC-CGGGCGa -3'
miRNA:   3'- -UGCGA-----CCGCCUGUGCGUGcGCCUGCa -5'
29583 3' -60.9 NC_006151.1 + 66669 0.75 0.248971
Target:  5'- -gGCggcGGUGGACGC-CAUGCGGACGUc -3'
miRNA:   3'- ugCGa--CCGCCUGUGcGUGCGCCUGCA- -5'
29583 3' -60.9 NC_006151.1 + 112954 0.74 0.253056
Target:  5'- cGCGCgauguuuuucaccgUGGCGGACGCGCGCGCGccgcCGa -3'
miRNA:   3'- -UGCG--------------ACCGCCUGUGCGUGCGCcu--GCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.