Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29583 | 5' | -53 | NC_006151.1 | + | 18057 | 0.66 | 0.975061 |
Target: 5'- -aGCGGgGAGcgGGgucccuUGGggGCCAGCAg -3' miRNA: 3'- gaUGCCgCUCuaCC------ACUagCGGUUGU- -5' |
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29583 | 5' | -53 | NC_006151.1 | + | 21459 | 0.66 | 0.972335 |
Target: 5'- --cCGGCGGcGUGGUcccgcGUCGCCGGCu -3' miRNA: 3'- gauGCCGCUcUACCAc----UAGCGGUUGu -5' |
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29583 | 5' | -53 | NC_006151.1 | + | 67866 | 0.66 | 0.972335 |
Target: 5'- -gGCGcCGAGGUGGcgcGcgCGCCAGCc -3' miRNA: 3'- gaUGCcGCUCUACCa--CuaGCGGUUGu -5' |
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29583 | 5' | -53 | NC_006151.1 | + | 51813 | 0.66 | 0.972335 |
Target: 5'- cCUGCGaccGCGcGAUGGUcAUgGCCAGCu -3' miRNA: 3'- -GAUGC---CGCuCUACCAcUAgCGGUUGu -5' |
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29583 | 5' | -53 | NC_006151.1 | + | 4572 | 0.66 | 0.969401 |
Target: 5'- -aGCGGCGGGGUcacgcugccGGUGAUgaaggaGCCGugGc -3' miRNA: 3'- gaUGCCGCUCUA---------CCACUAg-----CGGUugU- -5' |
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29583 | 5' | -53 | NC_006151.1 | + | 31762 | 0.66 | 0.966251 |
Target: 5'- cCUGCGGCG-GcgGGcGcgCGCCGGg- -3' miRNA: 3'- -GAUGCCGCuCuaCCaCuaGCGGUUgu -5' |
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29583 | 5' | -53 | NC_006151.1 | + | 44525 | 0.66 | 0.964255 |
Target: 5'- -cGCgGGCGAGAagagcgaugugguggUGGUGGUgGUCGAUg -3' miRNA: 3'- gaUG-CCGCUCU---------------ACCACUAgCGGUUGu -5' |
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29583 | 5' | -53 | NC_006151.1 | + | 112057 | 0.66 | 0.962879 |
Target: 5'- -gGCGGCGGcGGUGGUGGUgggGCUggUg -3' miRNA: 3'- gaUGCCGCU-CUACCACUAg--CGGuuGu -5' |
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29583 | 5' | -53 | NC_006151.1 | + | 101049 | 0.67 | 0.955448 |
Target: 5'- -gACGGcCGAcgcGGUGGUCGUCGGCu -3' miRNA: 3'- gaUGCC-GCUcuaCCACUAGCGGUUGu -5' |
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29583 | 5' | -53 | NC_006151.1 | + | 41090 | 0.67 | 0.951378 |
Target: 5'- -gACGGUGu--UGGUGGUC-CCGGCGg -3' miRNA: 3'- gaUGCCGCucuACCACUAGcGGUUGU- -5' |
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29583 | 5' | -53 | NC_006151.1 | + | 25218 | 0.67 | 0.951378 |
Target: 5'- cCU-CGGCG-GAgccgcgaccucuUGGUGAcccaucuccacaUCGCCAACAu -3' miRNA: 3'- -GAuGCCGCuCU------------ACCACU------------AGCGGUUGU- -5' |
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29583 | 5' | -53 | NC_006151.1 | + | 53944 | 0.67 | 0.947067 |
Target: 5'- -cGCGGCGAGGgacuUGAaccaCGCCAGCGg -3' miRNA: 3'- gaUGCCGCUCUacc-ACUa---GCGGUUGU- -5' |
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29583 | 5' | -53 | NC_006151.1 | + | 54925 | 0.67 | 0.937706 |
Target: 5'- -cACGGCGAGGUGcUGGcgUGCCAcGCGc -3' miRNA: 3'- gaUGCCGCUCUACcACUa-GCGGU-UGU- -5' |
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29583 | 5' | -53 | NC_006151.1 | + | 21950 | 0.67 | 0.936217 |
Target: 5'- -cGCGGaCGGGuccaccacaucggcGUGGUGcggCGCCGGCAg -3' miRNA: 3'- gaUGCC-GCUC--------------UACCACua-GCGGUUGU- -5' |
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29583 | 5' | -53 | NC_006151.1 | + | 122174 | 0.68 | 0.932653 |
Target: 5'- -gGCGGCGGGcucGUGGUGc-CGCCGGa- -3' miRNA: 3'- gaUGCCGCUC---UACCACuaGCGGUUgu -5' |
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29583 | 5' | -53 | NC_006151.1 | + | 44203 | 0.68 | 0.927349 |
Target: 5'- -gGCGGCGGGAgaUGGUGAUgGUgGu-- -3' miRNA: 3'- gaUGCCGCUCU--ACCACUAgCGgUugu -5' |
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29583 | 5' | -53 | NC_006151.1 | + | 90264 | 0.68 | 0.921794 |
Target: 5'- -cGCGGCGaAGAcGGcGG-CGCCGACGa -3' miRNA: 3'- gaUGCCGC-UCUaCCaCUaGCGGUUGU- -5' |
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29583 | 5' | -53 | NC_006151.1 | + | 90780 | 0.68 | 0.915394 |
Target: 5'- --uCGGCGggcgcgcagaagaAGAaGGUGGUCGCCcGCAc -3' miRNA: 3'- gauGCCGC-------------UCUaCCACUAGCGGuUGU- -5' |
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29583 | 5' | -53 | NC_006151.1 | + | 84399 | 0.68 | 0.909934 |
Target: 5'- -gGCGGgGAGcgGGUGggCGCgGugAu -3' miRNA: 3'- gaUGCCgCUCuaCCACuaGCGgUugU- -5' |
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29583 | 5' | -53 | NC_006151.1 | + | 84832 | 0.69 | 0.903631 |
Target: 5'- -gGCcGCGAGGUGcaGAUCGCCAAgAa -3' miRNA: 3'- gaUGcCGCUCUACcaCUAGCGGUUgU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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