miRNA display CGI


Results 1 - 20 of 290 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29590 3' -61.2 NC_006151.1 + 141637 0.67 0.588188
Target:  5'- cGCuGCCgcGGCGGCgCGGCGggGCcccGCGGg -3'
miRNA:   3'- -CG-CGG--UCGCUGaGCCGCgaCGa--CGCC- -5'
29590 3' -61.2 NC_006151.1 + 141407 0.69 0.49245
Target:  5'- cGUGuCCGGCGA-UCGGUGCggGC-GCGGc -3'
miRNA:   3'- -CGC-GGUCGCUgAGCCGCGa-CGaCGCC- -5'
29590 3' -61.2 NC_006151.1 + 140368 0.67 0.627623
Target:  5'- cGCGUCGucgagcGCGGCUCGaGCuGCgUGCUGCc- -3'
miRNA:   3'- -CGCGGU------CGCUGAGC-CG-CG-ACGACGcc -5'
29590 3' -61.2 NC_006151.1 + 139641 0.67 0.617742
Target:  5'- gGCGCCGGCG-Cg-GGgGUcGCgGCGGg -3'
miRNA:   3'- -CGCGGUCGCuGagCCgCGaCGaCGCC- -5'
29590 3' -61.2 NC_006151.1 + 139593 0.7 0.438528
Target:  5'- cGCGCCcccccgAGCGGCggcccguccgGGCGCgGCUGgGGg -3'
miRNA:   3'- -CGCGG------UCGCUGag--------CCGCGaCGACgCC- -5'
29590 3' -61.2 NC_006151.1 + 139288 0.73 0.292794
Target:  5'- cGCGCCgcccucGGCGuCUgCGGCGCgUGCUGCu- -3'
miRNA:   3'- -CGCGG------UCGCuGA-GCCGCG-ACGACGcc -5'
29590 3' -61.2 NC_006151.1 + 139188 0.67 0.588188
Target:  5'- uGUGCUGGCGGuCggGGCGCUGgaGCu- -3'
miRNA:   3'- -CGCGGUCGCU-GagCCGCGACgaCGcc -5'
29590 3' -61.2 NC_006151.1 + 138743 0.67 0.617742
Target:  5'- cGCGCC-GCGACUgCcGCGCcuacCUGUGGg -3'
miRNA:   3'- -CGCGGuCGCUGA-GcCGCGac--GACGCC- -5'
29590 3' -61.2 NC_006151.1 + 138700 0.66 0.676928
Target:  5'- cGCGCUgAGCc---CGGCGCUGCgcgccgcgcGCGGg -3'
miRNA:   3'- -CGCGG-UCGcugaGCCGCGACGa--------CGCC- -5'
29590 3' -61.2 NC_006151.1 + 138161 0.67 0.607872
Target:  5'- cGCGCUcgaggccuucguGGCgGACguggccaUGGCGCccgUGCUGCGGc -3'
miRNA:   3'- -CGCGG------------UCG-CUGa------GCCGCG---ACGACGCC- -5'
29590 3' -61.2 NC_006151.1 + 137779 0.66 0.696464
Target:  5'- uGCuCCAGCaGGC-CGuGCuGCUGgaGCGGg -3'
miRNA:   3'- -CGcGGUCG-CUGaGC-CG-CGACgaCGCC- -5'
29590 3' -61.2 NC_006151.1 + 137006 0.7 0.456136
Target:  5'- cGCGCaCGGCG-CUgGGCGCccUGCU-CGGc -3'
miRNA:   3'- -CGCG-GUCGCuGAgCCGCG--ACGAcGCC- -5'
29590 3' -61.2 NC_006151.1 + 136809 0.66 0.676928
Target:  5'- cGCGCUcGCGGC-CGacGCGCcGC-GCGGg -3'
miRNA:   3'- -CGCGGuCGCUGaGC--CGCGaCGaCGCC- -5'
29590 3' -61.2 NC_006151.1 + 135906 0.66 0.644423
Target:  5'- cCGCC-GCGACccCGGCGgucgugcgcgcgcuCUGCcGCGGg -3'
miRNA:   3'- cGCGGuCGCUGa-GCCGC--------------GACGaCGCC- -5'
29590 3' -61.2 NC_006151.1 + 135569 0.71 0.412862
Target:  5'- -gGCCAGCGACUCccggaGGCGgaGUucguccgGCGGc -3'
miRNA:   3'- cgCGGUCGCUGAG-----CCGCgaCGa------CGCC- -5'
29590 3' -61.2 NC_006151.1 + 135471 0.8 0.111546
Target:  5'- cGCGCCAGCGugUCcGCGCggGCcagGCGGc -3'
miRNA:   3'- -CGCGGUCGCugAGcCGCGa-CGa--CGCC- -5'
29590 3' -61.2 NC_006151.1 + 133666 0.67 0.637506
Target:  5'- cGCuGCCGGCG-CggCGGCGC-GCccccgagGCGGu -3'
miRNA:   3'- -CG-CGGUCGCuGa-GCCGCGaCGa------CGCC- -5'
29590 3' -61.2 NC_006151.1 + 133333 0.71 0.412862
Target:  5'- cGCGCCGGgCGGC-CGGUuccGCgGCgGCGGu -3'
miRNA:   3'- -CGCGGUC-GCUGaGCCG---CGaCGaCGCC- -5'
29590 3' -61.2 NC_006151.1 + 133141 0.66 0.706161
Target:  5'- uGUcCCAGaggGACUCGGCGgCgGC-GCGGg -3'
miRNA:   3'- -CGcGGUCg--CUGAGCCGC-GaCGaCGCC- -5'
29590 3' -61.2 NC_006151.1 + 132140 0.76 0.192324
Target:  5'- cGCGCCGGCGGugguugaCGGCGCgcaGCUGCGcGg -3'
miRNA:   3'- -CGCGGUCGCUga-----GCCGCGa--CGACGC-C- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.