miRNA display CGI


Results 21 - 40 of 76 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29598 3' -59.3 NC_006151.1 + 51398 0.7 0.570908
Target:  5'- cCGGGGCGagCGCgUCGcAGCGcGU-GCa -3'
miRNA:   3'- -GCCCCGCaaGCGgAGC-UCGCaCAgCG- -5'
29598 3' -59.3 NC_006151.1 + 71948 0.7 0.570908
Target:  5'- gCGaGcGCGUggcCGCCUCG-GCGuUGUCGCg -3'
miRNA:   3'- -GCcC-CGCAa--GCGGAGCuCGC-ACAGCG- -5'
29598 3' -59.3 NC_006151.1 + 27464 0.69 0.590543
Target:  5'- gGGGGCGggCGg-UCGAGCGggggGUCGg -3'
miRNA:   3'- gCCCCGCaaGCggAGCUCGCa---CAGCg -5'
29598 3' -59.3 NC_006151.1 + 27083 0.69 0.590543
Target:  5'- aGaGGGCGcggCGCagggCGcGCGUGUCGCc -3'
miRNA:   3'- gC-CCCGCaa-GCGga--GCuCGCACAGCG- -5'
29598 3' -59.3 NC_006151.1 + 84016 0.69 0.600407
Target:  5'- uCGGGGUGcgcCGCCcCGAcuGCGUGUgCGUg -3'
miRNA:   3'- -GCCCCGCaa-GCGGaGCU--CGCACA-GCG- -5'
29598 3' -59.3 NC_006151.1 + 46851 0.69 0.609302
Target:  5'- cCGGGGCGg--GCCUCcGGCGUcuagcucGUCGg -3'
miRNA:   3'- -GCCCCGCaagCGGAGcUCGCA-------CAGCg -5'
29598 3' -59.3 NC_006151.1 + 41515 0.69 0.610292
Target:  5'- uGGGGCGggCGCCgcgGAGCGgaa-GCc -3'
miRNA:   3'- gCCCCGCaaGCGGag-CUCGCacagCG- -5'
29598 3' -59.3 NC_006151.1 + 133243 0.69 0.610292
Target:  5'- aGGGcaCGUUgGCCUCGcacGGCcUGUCGCu -3'
miRNA:   3'- gCCCc-GCAAgCGGAGC---UCGcACAGCG- -5'
29598 3' -59.3 NC_006151.1 + 19293 0.69 0.610292
Target:  5'- cCGGGGCcagCGgCgCGGGCGgccgGUCGCc -3'
miRNA:   3'- -GCCCCGcaaGCgGaGCUCGCa---CAGCG- -5'
29598 3' -59.3 NC_006151.1 + 69327 0.69 0.630101
Target:  5'- gCGcGGGCGcgUCGCCgcccgCGAGCGcGgCGUa -3'
miRNA:   3'- -GC-CCCGCa-AGCGGa----GCUCGCaCaGCG- -5'
29598 3' -59.3 NC_006151.1 + 68077 0.69 0.630101
Target:  5'- aGGucGGCGggcagCGCCUCGAGgcuCGcGUCGCc -3'
miRNA:   3'- gCC--CCGCaa---GCGGAGCUC---GCaCAGCG- -5'
29598 3' -59.3 NC_006151.1 + 45347 0.69 0.640012
Target:  5'- aCGGGaGCGUgugGCC-CGAGUGUGagCGUg -3'
miRNA:   3'- -GCCC-CGCAag-CGGaGCUCGCACa-GCG- -5'
29598 3' -59.3 NC_006151.1 + 26330 0.69 0.640012
Target:  5'- gCGGGGCGaggccCGCCUCacgGGGCGgcggcggGcCGCg -3'
miRNA:   3'- -GCCCCGCaa---GCGGAG---CUCGCa------CaGCG- -5'
29598 3' -59.3 NC_006151.1 + 20768 0.69 0.640012
Target:  5'- gCGGcGGaCGcgCGCCgggCGAGCGgcUCGCg -3'
miRNA:   3'- -GCC-CC-GCaaGCGGa--GCUCGCacAGCG- -5'
29598 3' -59.3 NC_006151.1 + 53343 0.69 0.640012
Target:  5'- aCGGGGCGcgcgcgCGCCgCGuacuGCGUcguGUCGUa -3'
miRNA:   3'- -GCCCCGCaa----GCGGaGCu---CGCA---CAGCG- -5'
29598 3' -59.3 NC_006151.1 + 53970 0.68 0.649916
Target:  5'- gCGGcGGCGg-CGCCUCc-GCGggcGUCGCg -3'
miRNA:   3'- -GCC-CCGCaaGCGGAGcuCGCa--CAGCG- -5'
29598 3' -59.3 NC_006151.1 + 127412 0.68 0.659808
Target:  5'- aCGGGagcccGCGgggUCGCCUCGGcgcuCGUG-CGCg -3'
miRNA:   3'- -GCCC-----CGCa--AGCGGAGCUc---GCACaGCG- -5'
29598 3' -59.3 NC_006151.1 + 115566 0.68 0.659808
Target:  5'- cCGcGGGCGggCGCg-CGGGCaG-GUCGCg -3'
miRNA:   3'- -GC-CCCGCaaGCGgaGCUCG-CaCAGCG- -5'
29598 3' -59.3 NC_006151.1 + 135090 0.68 0.659808
Target:  5'- gGGGGCGgcgggGCCgggCGGGCGgcgGUagCGCg -3'
miRNA:   3'- gCCCCGCaag--CGGa--GCUCGCa--CA--GCG- -5'
29598 3' -59.3 NC_006151.1 + 61287 0.68 0.669678
Target:  5'- gCGGGGaCGgaaGCUcgaCGGGCGcGUCGCg -3'
miRNA:   3'- -GCCCC-GCaagCGGa--GCUCGCaCAGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.