miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29598 3' -59.3 NC_006151.1 + 141753 0.72 0.440237
Target:  5'- gCGGGGCGcgCGCCcCG-GUGgcGUCGCc -3'
miRNA:   3'- -GCCCCGCaaGCGGaGCuCGCa-CAGCG- -5'
29598 3' -59.3 NC_006151.1 + 136650 0.67 0.746934
Target:  5'- uGGGGCGcUCGCCccUCGgggAGCGcgcgGcCGCc -3'
miRNA:   3'- gCCCCGCaAGCGG--AGC---UCGCa---CaGCG- -5'
29598 3' -59.3 NC_006151.1 + 135739 0.74 0.358025
Target:  5'- gGGGGCGgucuacgUCGUCUCGuacGCGUGggacggCGCc -3'
miRNA:   3'- gCCCCGCa------AGCGGAGCu--CGCACa-----GCG- -5'
29598 3' -59.3 NC_006151.1 + 135090 0.68 0.659808
Target:  5'- gGGGGCGgcgggGCCgggCGGGCGgcgGUagCGCg -3'
miRNA:   3'- gCCCCGCaag--CGGa--GCUCGCa--CA--GCG- -5'
29598 3' -59.3 NC_006151.1 + 133387 0.68 0.699087
Target:  5'- cCGGGGCGgcgGCCggggcCGAGCGggcgGUCu- -3'
miRNA:   3'- -GCCCCGCaagCGGa----GCUCGCa---CAGcg -5'
29598 3' -59.3 NC_006151.1 + 133243 0.69 0.610292
Target:  5'- aGGGcaCGUUgGCCUCGcacGGCcUGUCGCu -3'
miRNA:   3'- gCCCc-GCAAgCGGAGC---UCGcACAGCG- -5'
29598 3' -59.3 NC_006151.1 + 133164 0.66 0.774577
Target:  5'- gCGcGGGCGUggGCCUCGGccacGCGUcccacgGcCGCg -3'
miRNA:   3'- -GC-CCCGCAagCGGAGCU----CGCA------CaGCG- -5'
29598 3' -59.3 NC_006151.1 + 131849 0.71 0.49256
Target:  5'- gCGGGGCGgccgagacgcgCGCCggCG-GCGUcggGUCGCa -3'
miRNA:   3'- -GCCCCGCaa---------GCGGa-GCuCGCA---CAGCG- -5'
29598 3' -59.3 NC_006151.1 + 131735 0.68 0.67952
Target:  5'- gCGGGGUGgcggGCC-CGGGCGaggcgaccGUCGCg -3'
miRNA:   3'- -GCCCCGCaag-CGGaGCUCGCa-------CAGCG- -5'
29598 3' -59.3 NC_006151.1 + 130936 0.66 0.774577
Target:  5'- gGGGGCGgggGCggCGGGgG-GUCGCg -3'
miRNA:   3'- gCCCCGCaagCGgaGCUCgCaCAGCG- -5'
29598 3' -59.3 NC_006151.1 + 127412 0.68 0.659808
Target:  5'- aCGGGagcccGCGgggUCGCCUCGGcgcuCGUG-CGCg -3'
miRNA:   3'- -GCCC-----CGCa--AGCGGAGCUc---GCACaGCG- -5'
29598 3' -59.3 NC_006151.1 + 126133 0.75 0.326134
Target:  5'- uCGGGGCGcUCGCCaUCGGGCugcuggugcuggccGgccugGUCGCg -3'
miRNA:   3'- -GCCCCGCaAGCGG-AGCUCG--------------Ca----CAGCG- -5'
29598 3' -59.3 NC_006151.1 + 121403 0.66 0.774577
Target:  5'- uGGGGCcugCGgCgCGGGCGgggacGUCGCg -3'
miRNA:   3'- gCCCCGcaaGCgGaGCUCGCa----CAGCG- -5'
29598 3' -59.3 NC_006151.1 + 115566 0.68 0.659808
Target:  5'- cCGcGGGCGggCGCg-CGGGCaG-GUCGCg -3'
miRNA:   3'- -GC-CCCGCaaGCGgaGCUCG-CaCAGCG- -5'
29598 3' -59.3 NC_006151.1 + 115185 0.67 0.752538
Target:  5'- gGGGGCGcuccagccagcgCGCCgCGGGCGcG-CGCg -3'
miRNA:   3'- gCCCCGCaa----------GCGGaGCUCGCaCaGCG- -5'
29598 3' -59.3 NC_006151.1 + 112352 0.71 0.494416
Target:  5'- gGGGGCagguaGUUgGCCUCGAGaaaGUccacgucgaaGUCGCg -3'
miRNA:   3'- gCCCCG-----CAAgCGGAGCUCg--CA----------CAGCG- -5'
29598 3' -59.3 NC_006151.1 + 111412 0.66 0.801147
Target:  5'- cCGGGGCGggaGaC-CGAGCGcUGcCGCa -3'
miRNA:   3'- -GCCCCGCaagCgGaGCUCGC-ACaGCG- -5'
29598 3' -59.3 NC_006151.1 + 111047 0.7 0.561149
Target:  5'- -cGGGCaGggCGcCCUCGAGCGUcugCGCg -3'
miRNA:   3'- gcCCCG-CaaGC-GGAGCUCGCAca-GCG- -5'
29598 3' -59.3 NC_006151.1 + 98340 0.7 0.561149
Target:  5'- gCGGGccGCGagaCGCCcgCGGGCGUG-CGCg -3'
miRNA:   3'- -GCCC--CGCaa-GCGGa-GCUCGCACaGCG- -5'
29598 3' -59.3 NC_006151.1 + 97385 0.73 0.389597
Target:  5'- gGGGGCGUcgGCCUCGucCGUGcCGUg -3'
miRNA:   3'- gCCCCGCAagCGGAGCucGCACaGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.