miRNA display CGI


Results 21 - 40 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29599 3' -51.2 NC_006151.1 + 123951 0.7 0.903757
Target:  5'- cGCccgGGACGGGCGCCaccccCAACGACg -3'
miRNA:   3'- -CGca-CCUGCUCGUGGacua-GUUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 130051 0.7 0.903757
Target:  5'- cGCGUGGugcaucGCGAGCAC--GGUCAGCGu- -3'
miRNA:   3'- -CGCACC------UGCUCGUGgaCUAGUUGUug -5'
29599 3' -51.2 NC_006151.1 + 134214 0.7 0.903757
Target:  5'- cGCGgGGGCGGucGCACCaccaacggGAUCGugGACg -3'
miRNA:   3'- -CGCaCCUGCU--CGUGGa-------CUAGUugUUG- -5'
29599 3' -51.2 NC_006151.1 + 661 0.7 0.910137
Target:  5'- cGCGgccgGGGCGGGCuCCgcgGAUCGcauCGGCg -3'
miRNA:   3'- -CGCa---CCUGCUCGuGGa--CUAGUu--GUUG- -5'
29599 3' -51.2 NC_006151.1 + 60956 0.7 0.910137
Target:  5'- aGCGUGGACaug-ACCUcGUCGACGACg -3'
miRNA:   3'- -CGCACCUGcucgUGGAcUAGUUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 85372 0.7 0.910137
Target:  5'- cGCGUGGuccccggcgcgaACGucGGCGCCaacgaGGUCGACGGCg -3'
miRNA:   3'- -CGCACC------------UGC--UCGUGGa----CUAGUUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 75430 0.7 0.912617
Target:  5'- gGCGUGGGCGcgaagcugccggcguGGCGCgCguagcGGUCGGCGGCc -3'
miRNA:   3'- -CGCACCUGC---------------UCGUG-Ga----CUAGUUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 85568 0.7 0.916262
Target:  5'- aCGUGuACGGGgacCGCCUGcgCAACAACu -3'
miRNA:   3'- cGCACcUGCUC---GUGGACuaGUUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 110104 0.7 0.916262
Target:  5'- cGCGUGGugGAGUcggacACgCUcAUCAACAGg -3'
miRNA:   3'- -CGCACCugCUCG-----UG-GAcUAGUUGUUg -5'
29599 3' -51.2 NC_006151.1 + 113237 0.7 0.916262
Target:  5'- cCGUGGACGAGUACUgggcgGAgcaCGAgGGCu -3'
miRNA:   3'- cGCACCUGCUCGUGGa----CUa--GUUgUUG- -5'
29599 3' -51.2 NC_006151.1 + 121196 0.7 0.921555
Target:  5'- cGCGcucgGGGCGcgcacgcAGCACCUGGagccCGACGACu -3'
miRNA:   3'- -CGCa---CCUGC-------UCGUGGACUa---GUUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 118794 0.7 0.927742
Target:  5'- cGCGcGGcGCGGcGCACCUGGccuUCGACGAg -3'
miRNA:   3'- -CGCaCC-UGCU-CGUGGACU---AGUUGUUg -5'
29599 3' -51.2 NC_006151.1 + 128367 0.7 0.927742
Target:  5'- cGCGUGGugGuGCACgaaGGUCAcgagguccACGGCg -3'
miRNA:   3'- -CGCACCugCuCGUGga-CUAGU--------UGUUG- -5'
29599 3' -51.2 NC_006151.1 + 29213 0.7 0.927742
Target:  5'- gGCGggguggGGAUGGGuCACCgccgGGUCGGCcGCg -3'
miRNA:   3'- -CGCa-----CCUGCUC-GUGGa---CUAGUUGuUG- -5'
29599 3' -51.2 NC_006151.1 + 17136 0.69 0.933095
Target:  5'- uGCGggagGcGGCcagGAGCACCUGGUCGcagaggucgGCGGCg -3'
miRNA:   3'- -CGCa---C-CUG---CUCGUGGACUAGU---------UGUUG- -5'
29599 3' -51.2 NC_006151.1 + 98410 0.69 0.938192
Target:  5'- aCGUcGaGACGGGCACCUGcgaGGCGGCc -3'
miRNA:   3'- cGCA-C-CUGCUCGUGGACuagUUGUUG- -5'
29599 3' -51.2 NC_006151.1 + 84682 0.69 0.938192
Target:  5'- -gGUGGACGAGCAgCUG--CGGCcGCu -3'
miRNA:   3'- cgCACCUGCUCGUgGACuaGUUGuUG- -5'
29599 3' -51.2 NC_006151.1 + 53316 0.69 0.943033
Target:  5'- uGCGUGGGCGAGC-CCacacaGACGAg -3'
miRNA:   3'- -CGCACCUGCUCGuGGacuagUUGUUg -5'
29599 3' -51.2 NC_006151.1 + 101223 0.69 0.943033
Target:  5'- gGCGUGGACGgggcccggcgggGGCAUgUGcgccAUCAGCGAg -3'
miRNA:   3'- -CGCACCUGC------------UCGUGgAC----UAGUUGUUg -5'
29599 3' -51.2 NC_006151.1 + 55256 0.69 0.951956
Target:  5'- ---aGGACGccuuccGCACCuccgUGGUCAACAGCa -3'
miRNA:   3'- cgcaCCUGCu-----CGUGG----ACUAGUUGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.