Results 1 - 20 of 99 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29599 | 3' | -51.2 | NC_006151.1 | + | 141538 | 0.66 | 0.989412 |
Target: 5'- aCGUGaGCGAGCugCUGcgCGAgAGg -3' miRNA: 3'- cGCACcUGCUCGugGACuaGUUgUUg -5' |
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29599 | 3' | -51.2 | NC_006151.1 | + | 139566 | 0.66 | 0.990733 |
Target: 5'- gGCGcccGGuccGCGAGCGCCUGGgcUCGcgcccccccgaGCGGCg -3' miRNA: 3'- -CGCa--CC---UGCUCGUGGACU--AGU-----------UGUUG- -5' |
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29599 | 3' | -51.2 | NC_006151.1 | + | 139194 | 0.68 | 0.959889 |
Target: 5'- gGCGgucgGGGCgcugGAGCuCCUGG-CGGCGACg -3' miRNA: 3'- -CGCa---CCUG----CUCGuGGACUaGUUGUUG- -5' |
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29599 | 3' | -51.2 | NC_006151.1 | + | 136594 | 0.72 | 0.835548 |
Target: 5'- cGCGcGGcuccGCGAGCACCUGGacgccgUCAACGucACg -3' miRNA: 3'- -CGCaCC----UGCUCGUGGACU------AGUUGU--UG- -5' |
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29599 | 3' | -51.2 | NC_006151.1 | + | 136452 | 0.66 | 0.990733 |
Target: 5'- aCGUcGACGAGCGCgUGcgCGcCGACc -3' miRNA: 3'- cGCAcCUGCUCGUGgACuaGUuGUUG- -5' |
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29599 | 3' | -51.2 | NC_006151.1 | + | 135763 | 0.66 | 0.991921 |
Target: 5'- cGCGUgGGACG-GCGCCgGGcUgGACGAg -3' miRNA: 3'- -CGCA-CCUGCuCGUGGaCU-AgUUGUUg -5' |
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29599 | 3' | -51.2 | NC_006151.1 | + | 134214 | 0.7 | 0.903757 |
Target: 5'- cGCGgGGGCGGucGCACCaccaacggGAUCGugGACg -3' miRNA: 3'- -CGCaCCUGCU--CGUGGa-------CUAGUugUUG- -5' |
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29599 | 3' | -51.2 | NC_006151.1 | + | 131650 | 0.68 | 0.963496 |
Target: 5'- -gGUGGuCGGGCGCCgcaGAUcCGACcGCg -3' miRNA: 3'- cgCACCuGCUCGUGGa--CUA-GUUGuUG- -5' |
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29599 | 3' | -51.2 | NC_006151.1 | + | 130051 | 0.7 | 0.903757 |
Target: 5'- cGCGUGGugcaucGCGAGCAC--GGUCAGCGu- -3' miRNA: 3'- -CGCACC------UGCUCGUGgaCUAGUUGUug -5' |
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29599 | 3' | -51.2 | NC_006151.1 | + | 129796 | 0.66 | 0.985288 |
Target: 5'- gGCGUGGGCccgcaugaggcccguGAGCGCg-GAgcgcgCGGCGGCg -3' miRNA: 3'- -CGCACCUG---------------CUCGUGgaCUa----GUUGUUG- -5' |
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29599 | 3' | -51.2 | NC_006151.1 | + | 129468 | 0.68 | 0.966543 |
Target: 5'- gGCG-GGACGAGCccguCCaGGUCcucggagGGCAGCg -3' miRNA: 3'- -CGCaCCUGCUCGu---GGaCUAG-------UUGUUG- -5' |
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29599 | 3' | -51.2 | NC_006151.1 | + | 128367 | 0.7 | 0.927742 |
Target: 5'- cGCGUGGugGuGCACgaaGGUCAcgagguccACGGCg -3' miRNA: 3'- -CGCACCugCuCGUGga-CUAGU--------UGUUG- -5' |
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29599 | 3' | -51.2 | NC_006151.1 | + | 128220 | 0.68 | 0.96687 |
Target: 5'- gGCGUGcGACGAGCucgugggcGCCaGGUCGcCGAUc -3' miRNA: 3'- -CGCAC-CUGCUCG--------UGGaCUAGUuGUUG- -5' |
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29599 | 3' | -51.2 | NC_006151.1 | + | 125259 | 0.66 | 0.987949 |
Target: 5'- gGCGgGGAcgccCGAGcCGCCggccGUCAACGGCa -3' miRNA: 3'- -CGCaCCU----GCUC-GUGGac--UAGUUGUUG- -5' |
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29599 | 3' | -51.2 | NC_006151.1 | + | 124937 | 0.67 | 0.978171 |
Target: 5'- cGCG-GGcccUGGGCGCCUccuucGUCAGCGACg -3' miRNA: 3'- -CGCaCCu--GCUCGUGGAc----UAGUUGUUG- -5' |
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29599 | 3' | -51.2 | NC_006151.1 | + | 124391 | 0.69 | 0.951956 |
Target: 5'- uGCGUcuccaaGGcCGAGUACgUGcgCAACAACc -3' miRNA: 3'- -CGCA------CCuGCUCGUGgACuaGUUGUUG- -5' |
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29599 | 3' | -51.2 | NC_006151.1 | + | 123951 | 0.7 | 0.903757 |
Target: 5'- cGCccgGGACGGGCGCCaccccCAACGACg -3' miRNA: 3'- -CGca-CCUGCUCGUGGacua-GUUGUUG- -5' |
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29599 | 3' | -51.2 | NC_006151.1 | + | 123284 | 0.74 | 0.741377 |
Target: 5'- uCGUGGACGAGCGCgaGAcgggcugcuUCGACGcGCa -3' miRNA: 3'- cGCACCUGCUCGUGgaCU---------AGUUGU-UG- -5' |
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29599 | 3' | -51.2 | NC_006151.1 | + | 123036 | 0.66 | 0.986333 |
Target: 5'- gGCGUGGGCGG--ACCUGccggCcGCGGCg -3' miRNA: 3'- -CGCACCUGCUcgUGGACua--GuUGUUG- -5' |
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29599 | 3' | -51.2 | NC_006151.1 | + | 122330 | 0.66 | 0.991921 |
Target: 5'- cGCGUGGAcccCGAGgACgUGGcCAAgAACc -3' miRNA: 3'- -CGCACCU---GCUCgUGgACUaGUUgUUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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