miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29599 5' -53.7 NC_006151.1 + 131439 0.66 0.97566
Target:  5'- cUCGUCGggCGGCGGGcggaaGUCcgGgcgCCGCa -3'
miRNA:   3'- -AGCAGCa-GCUGCUC-----CAGuaCa--GGUGc -5'
29599 5' -53.7 NC_006151.1 + 131101 0.66 0.97566
Target:  5'- ---aCGUCGGCGGGGggcCcgG-CCGCGg -3'
miRNA:   3'- agcaGCAGCUGCUCCa--GuaCaGGUGC- -5'
29599 5' -53.7 NC_006151.1 + 89886 0.66 0.973049
Target:  5'- cCGcUCGggcUCGGCGgugGGGUCGgcGUCCGCGu -3'
miRNA:   3'- aGC-AGC---AGCUGC---UCCAGUa-CAGGUGC- -5'
29599 5' -53.7 NC_006151.1 + 81143 0.66 0.971387
Target:  5'- gUCGUUGcUGACGAuggcgagcacgagcgGGUUggcgAUGUCCACGc -3'
miRNA:   3'- -AGCAGCaGCUGCU---------------CCAG----UACAGGUGC- -5'
29599 5' -53.7 NC_006151.1 + 128368 0.66 0.967228
Target:  5'- gCGUgGUgGugcACGaAGGUCAcgagGUCCACGg -3'
miRNA:   3'- aGCAgCAgC---UGC-UCCAGUa---CAGGUGC- -5'
29599 5' -53.7 NC_006151.1 + 126049 0.66 0.967228
Target:  5'- cCGcCGUCGGCaAGGUg--GUCCugGg -3'
miRNA:   3'- aGCaGCAGCUGcUCCAguaCAGGugC- -5'
29599 5' -53.7 NC_006151.1 + 117222 0.66 0.964006
Target:  5'- gCGgCGUCGACGAcGcgCGcGUCCACGu -3'
miRNA:   3'- aGCaGCAGCUGCUcCa-GUaCAGGUGC- -5'
29599 5' -53.7 NC_006151.1 + 18461 0.67 0.960569
Target:  5'- gUCGUCGUCGuCGccGUCGUaguaGUCCuCGu -3'
miRNA:   3'- -AGCAGCAGCuGCucCAGUA----CAGGuGC- -5'
29599 5' -53.7 NC_006151.1 + 99244 0.67 0.960569
Target:  5'- ----gGUCGugGAGGcgcUCGUGaCCGCGg -3'
miRNA:   3'- agcagCAGCugCUCC---AGUACaGGUGC- -5'
29599 5' -53.7 NC_006151.1 + 58464 0.67 0.956912
Target:  5'- gCGUCGcgguccaCGACGAcGUCGgcGUCCACGu -3'
miRNA:   3'- aGCAGCa------GCUGCUcCAGUa-CAGGUGC- -5'
29599 5' -53.7 NC_006151.1 + 20540 0.67 0.95461
Target:  5'- gCGUCcUCGGCGGGGUCcacgacgcgcaggcuGUcGUgCCACGa -3'
miRNA:   3'- aGCAGcAGCUGCUCCAG---------------UA-CA-GGUGC- -5'
29599 5' -53.7 NC_006151.1 + 4944 0.67 0.939999
Target:  5'- cCGUCgGUCGGCGGGGgccCGUcggCCAUGa -3'
miRNA:   3'- aGCAG-CAGCUGCUCCa--GUAca-GGUGC- -5'
29599 5' -53.7 NC_006151.1 + 98985 0.68 0.930132
Target:  5'- ---cCGUgGGCGAGGUCAacgCCACGc -3'
miRNA:   3'- agcaGCAgCUGCUCCAGUacaGGUGC- -5'
29599 5' -53.7 NC_006151.1 + 4092 0.68 0.930132
Target:  5'- aCGgugCGggCGACGAGGgcgaCAgaGUCCGCGg -3'
miRNA:   3'- aGCa--GCa-GCUGCUCCa---GUa-CAGGUGC- -5'
29599 5' -53.7 NC_006151.1 + 23868 0.68 0.924841
Target:  5'- cCGguggCGUUGGCGGGGgcgagCggGUUCACGg -3'
miRNA:   3'- aGCa---GCAGCUGCUCCa----GuaCAGGUGC- -5'
29599 5' -53.7 NC_006151.1 + 62086 0.68 0.924841
Target:  5'- gUCGUCcUCGGCGcGGUCGg--CCugGg -3'
miRNA:   3'- -AGCAGcAGCUGCuCCAGUacaGGugC- -5'
29599 5' -53.7 NC_006151.1 + 62230 0.68 0.924841
Target:  5'- gUGuUCGUCGAgGucGUCGUGUCCGg- -3'
miRNA:   3'- aGC-AGCAGCUgCucCAGUACAGGUgc -5'
29599 5' -53.7 NC_006151.1 + 65672 0.68 0.924841
Target:  5'- gUCGUcCGgcaCGGCGAGGUCcccGUCCGgGc -3'
miRNA:   3'- -AGCA-GCa--GCUGCUCCAGua-CAGGUgC- -5'
29599 5' -53.7 NC_006151.1 + 95767 0.68 0.91931
Target:  5'- cUCGUCGgCGGCGAG--CAUG-CCGCGc -3'
miRNA:   3'- -AGCAGCaGCUGCUCcaGUACaGGUGC- -5'
29599 5' -53.7 NC_006151.1 + 60631 0.68 0.913542
Target:  5'- cCGUCGUCGggGCGGGGcUCccgGcCCGCGc -3'
miRNA:   3'- aGCAGCAGC--UGCUCC-AGua-CaGGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.