Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29599 | 5' | -53.7 | NC_006151.1 | + | 141670 | 0.7 | 0.851313 |
Target: 5'- --cUCGUUGugGAGG-CAUGUCUGCc -3' miRNA: 3'- agcAGCAGCugCUCCaGUACAGGUGc -5' |
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29599 | 5' | -53.7 | NC_006151.1 | + | 135275 | 0.73 | 0.695102 |
Target: 5'- ---cUGcUCGACGAGGUCGuccgUGUCCGCGu -3' miRNA: 3'- agcaGC-AGCUGCUCCAGU----ACAGGUGC- -5' |
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29599 | 5' | -53.7 | NC_006151.1 | + | 133123 | 0.74 | 0.65448 |
Target: 5'- cCGUCGUCGG-GGGGuUCAUGUCC-Ca -3' miRNA: 3'- aGCAGCAGCUgCUCC-AGUACAGGuGc -5' |
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29599 | 5' | -53.7 | NC_006151.1 | + | 131439 | 0.66 | 0.97566 |
Target: 5'- cUCGUCGggCGGCGGGcggaaGUCcgGgcgCCGCa -3' miRNA: 3'- -AGCAGCa-GCUGCUC-----CAGuaCa--GGUGc -5' |
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29599 | 5' | -53.7 | NC_006151.1 | + | 131101 | 0.66 | 0.97566 |
Target: 5'- ---aCGUCGGCGGGGggcCcgG-CCGCGg -3' miRNA: 3'- agcaGCAGCUGCUCCa--GuaCaGGUGC- -5' |
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29599 | 5' | -53.7 | NC_006151.1 | + | 129414 | 0.69 | 0.907536 |
Target: 5'- gCGUauUCGGCGAGGUCGacGUCCGg- -3' miRNA: 3'- aGCAgcAGCUGCUCCAGUa-CAGGUgc -5' |
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29599 | 5' | -53.7 | NC_006151.1 | + | 128368 | 0.66 | 0.967228 |
Target: 5'- gCGUgGUgGugcACGaAGGUCAcgagGUCCACGg -3' miRNA: 3'- aGCAgCAgC---UGC-UCCAGUa---CAGGUGC- -5' |
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29599 | 5' | -53.7 | NC_006151.1 | + | 126049 | 0.66 | 0.967228 |
Target: 5'- cCGcCGUCGGCaAGGUg--GUCCugGg -3' miRNA: 3'- aGCaGCAGCUGcUCCAguaCAGGugC- -5' |
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29599 | 5' | -53.7 | NC_006151.1 | + | 117222 | 0.66 | 0.964006 |
Target: 5'- gCGgCGUCGACGAcGcgCGcGUCCACGu -3' miRNA: 3'- aGCaGCAGCUGCUcCa-GUaCAGGUGC- -5' |
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29599 | 5' | -53.7 | NC_006151.1 | + | 117065 | 0.72 | 0.744623 |
Target: 5'- gUCGUgGUCGagcagcaggcGCGuGGUCGcGUCCACGc -3' miRNA: 3'- -AGCAgCAGC----------UGCuCCAGUaCAGGUGC- -5' |
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29599 | 5' | -53.7 | NC_006151.1 | + | 116445 | 0.69 | 0.881189 |
Target: 5'- cUUGUCGgcggCGACGGcGUaCAUGUCCAgGg -3' miRNA: 3'- -AGCAGCa---GCUGCUcCA-GUACAGGUgC- -5' |
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29599 | 5' | -53.7 | NC_006151.1 | + | 99364 | 0.7 | 0.83516 |
Target: 5'- -gGUCGUCGGCGGcGUCGUGcaCCGCc -3' miRNA: 3'- agCAGCAGCUGCUcCAGUACa-GGUGc -5' |
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29599 | 5' | -53.7 | NC_006151.1 | + | 99244 | 0.67 | 0.960569 |
Target: 5'- ----gGUCGugGAGGcgcUCGUGaCCGCGg -3' miRNA: 3'- agcagCAGCugCUCC---AGUACaGGUGC- -5' |
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29599 | 5' | -53.7 | NC_006151.1 | + | 98985 | 0.68 | 0.930132 |
Target: 5'- ---cCGUgGGCGAGGUCAacgCCACGc -3' miRNA: 3'- agcaGCAgCUGCUCCAGUacaGGUGC- -5' |
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29599 | 5' | -53.7 | NC_006151.1 | + | 98195 | 0.7 | 0.843332 |
Target: 5'- aUCGUCG-CGccgcGCGGGGUCGaGUgCGCGg -3' miRNA: 3'- -AGCAGCaGC----UGCUCCAGUaCAgGUGC- -5' |
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29599 | 5' | -53.7 | NC_006151.1 | + | 97557 | 0.73 | 0.715132 |
Target: 5'- cCGUCGUCGccgcCGAGGcgCAgcucgcgGUCCACGu -3' miRNA: 3'- aGCAGCAGCu---GCUCCa-GUa------CAGGUGC- -5' |
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29599 | 5' | -53.7 | NC_006151.1 | + | 95767 | 0.68 | 0.91931 |
Target: 5'- cUCGUCGgCGGCGAG--CAUG-CCGCGc -3' miRNA: 3'- -AGCAGCaGCUGCUCcaGUACaGGUGC- -5' |
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29599 | 5' | -53.7 | NC_006151.1 | + | 94184 | 0.78 | 0.465512 |
Target: 5'- gUUGaCGUUGACGAGGUC--GUCCGCGg -3' miRNA: 3'- -AGCaGCAGCUGCUCCAGuaCAGGUGC- -5' |
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29599 | 5' | -53.7 | NC_006151.1 | + | 89886 | 0.66 | 0.973049 |
Target: 5'- cCGcUCGggcUCGGCGgugGGGUCGgcGUCCGCGu -3' miRNA: 3'- aGC-AGC---AGCUGC---UCCAGUa-CAGGUGC- -5' |
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29599 | 5' | -53.7 | NC_006151.1 | + | 85423 | 0.71 | 0.826803 |
Target: 5'- --uUCGUgGACGAGGUCAaccgcgCCGCGg -3' miRNA: 3'- agcAGCAgCUGCUCCAGUaca---GGUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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