miRNA display CGI


Results 61 - 80 of 316 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29600 3' -56.5 NC_006151.1 + 59929 0.71 0.585915
Target:  5'- -aGGCGCgCGCcGUCAGCG-GCGGCUCg -3'
miRNA:   3'- acCUGCG-GUGcUAGUUGCgCGUCGAG- -5'
29600 3' -56.5 NC_006151.1 + 130054 0.71 0.593078
Target:  5'- gUGGugcauCGCgagCACGGUCAGCGUgaacaugggcgcgaGCAGCUCg -3'
miRNA:   3'- -ACCu----GCG---GUGCUAGUUGCG--------------CGUCGAG- -5'
29600 3' -56.5 NC_006151.1 + 39481 0.71 0.596152
Target:  5'- cGGGUGCCGCGAgCucCGCGCGGC-Cg -3'
miRNA:   3'- aCCUGCGGUGCUaGuuGCGCGUCGaG- -5'
29600 3' -56.5 NC_006151.1 + 8300 0.71 0.600254
Target:  5'- cGGGCGCCGCGuccCGccccgagcccccgggGCGCGCGGgcCUCg -3'
miRNA:   3'- aCCUGCGGUGCua-GU---------------UGCGCGUC--GAG- -5'
29600 3' -56.5 NC_006151.1 + 4275 0.71 0.605387
Target:  5'- aGGACGCCGCGG-CAggccaggacgcagGCGUccGCcAGCUCg -3'
miRNA:   3'- aCCUGCGGUGCUaGU-------------UGCG--CG-UCGAG- -5'
29600 3' -56.5 NC_006151.1 + 99468 0.71 0.606415
Target:  5'- gGGACGUgACGG-CGGCGCuGgGGCUCc -3'
miRNA:   3'- aCCUGCGgUGCUaGUUGCG-CgUCGAG- -5'
29600 3' -56.5 NC_006151.1 + 113207 0.71 0.606415
Target:  5'- cGGACGCCGcCGAggAGCGC-CGGCa- -3'
miRNA:   3'- aCCUGCGGU-GCUagUUGCGcGUCGag -5'
29600 3' -56.5 NC_006151.1 + 137740 0.71 0.606415
Target:  5'- cGGugGCCggcgccgacACGGUCcgcggccuGGCGCGCGuGCUCc -3'
miRNA:   3'- aCCugCGG---------UGCUAG--------UUGCGCGU-CGAG- -5'
29600 3' -56.5 NC_006151.1 + 122385 0.71 0.606415
Target:  5'- aGGcGCGCCGCGggC-GCGCGCuggcggcGCUCg -3'
miRNA:   3'- aCC-UGCGGUGCuaGuUGCGCGu------CGAG- -5'
29600 3' -56.5 NC_006151.1 + 20484 0.71 0.606415
Target:  5'- gGGGCGCgGgGGUCGuCG-GCGGCUCu -3'
miRNA:   3'- aCCUGCGgUgCUAGUuGCgCGUCGAG- -5'
29600 3' -56.5 NC_006151.1 + 75113 0.71 0.606415
Target:  5'- cGGGCGCCAgcagcUGGUCGGCggccggcgGCGCGGCcCa -3'
miRNA:   3'- aCCUGCGGU-----GCUAGUUG--------CGCGUCGaG- -5'
29600 3' -56.5 NC_006151.1 + 26936 0.71 0.606415
Target:  5'- aGGACG-CGCGGUCGuagacguCGCGCucguugAGCUCg -3'
miRNA:   3'- aCCUGCgGUGCUAGUu------GCGCG------UCGAG- -5'
29600 3' -56.5 NC_006151.1 + 110965 0.71 0.606415
Target:  5'- cGGGCGuccuCCACGAUC-GCGUGCGcCUCg -3'
miRNA:   3'- aCCUGC----GGUGCUAGuUGCGCGUcGAG- -5'
29600 3' -56.5 NC_006151.1 + 63392 0.7 0.626991
Target:  5'- cGGGCGUgACGAUCAGCagcacgggcacgGCGCAgGCg- -3'
miRNA:   3'- aCCUGCGgUGCUAGUUG------------CGCGU-CGag -5'
29600 3' -56.5 NC_006151.1 + 68920 0.7 0.626991
Target:  5'- cGGGCGgaUCGCGAacUCGaugaucuggcgcAUGCGCGGCUCg -3'
miRNA:   3'- aCCUGC--GGUGCU--AGU------------UGCGCGUCGAG- -5'
29600 3' -56.5 NC_006151.1 + 97835 0.7 0.626991
Target:  5'- uUGGuCGUCACGugc-GCGCGCAGCg- -3'
miRNA:   3'- -ACCuGCGGUGCuaguUGCGCGUCGag -5'
29600 3' -56.5 NC_006151.1 + 30265 0.7 0.626991
Target:  5'- cGGGCGCCACaGA-CAGCGgCGCGGg-- -3'
miRNA:   3'- aCCUGCGGUG-CUaGUUGC-GCGUCgag -5'
29600 3' -56.5 NC_006151.1 + 104657 0.7 0.626991
Target:  5'- cGGcCGCCGacg-CGGCGCGCGcGCUCg -3'
miRNA:   3'- aCCuGCGGUgcuaGUUGCGCGU-CGAG- -5'
29600 3' -56.5 NC_006151.1 + 92730 0.7 0.637289
Target:  5'- gUGGugGCCAUGcUCAcGCcgGCGCGGCa- -3'
miRNA:   3'- -ACCugCGGUGCuAGU-UG--CGCGUCGag -5'
29600 3' -56.5 NC_006151.1 + 122147 0.7 0.637289
Target:  5'- gUGGacgaguuccucGCGCgCACGAUCGGCG-GCgGGCUCg -3'
miRNA:   3'- -ACC-----------UGCG-GUGCUAGUUGCgCG-UCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.